Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P16
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    37   0.001
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    32   0.029
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.090
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    28   0.48 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.5  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   3.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   4.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.9  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   5.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   5.9  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   7.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   7.8  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 136 PCNPGVPSIPGSPGRPGAPGKPVLPFNPDRPGNPRSP 26
           P  P  P +P +P RP AP  P  P  P RP  P  P
Sbjct: 533 PAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVP 569



 Score = 31.9 bits (69), Expect = 0.039
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 403 APSIPLSPF*PSAPVIPGGPTSPLSPFI 320
           AP +P +P  P+APV+P  P+ P  P +
Sbjct: 538 APEVPSAPQRPAAPVVPEAPSVPQRPAV 565



 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 400 PSIPLSPF*PSAPVIPGGPTSPLSPFI 320
           P  P  P  P+APV+P  P+ P  P +
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAV 655



 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 400 PSIPLSPF*PSAPVIPGGPTSPLSPFI 320
           P  P  P  P+APV+P  P+ P  P +
Sbjct: 659 PEAPSVPQPPAAPVVPEVPSVPQPPAV 685


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 192 LPGRDGLDGQKGDQGPIGPVGLMGPTGYPGPKGDRGLPGLSINIKGDKGEVGPPGITGA 368
           +PG  G+      Q P+ P G+  P G P P    G P +   + G  G   PPG  G+
Sbjct: 508 IPGAPGMPNLNMSQPPMVPPGMALPPGMPAP--FPGYPAVPA-MPGIPGATAPPGAPGS 563



 Score = 31.5 bits (68), Expect = 0.051
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
 Frame = +3

Query: 75  LPGAPGRPG---------EPGMDGTPGLQGEI-GFPGLQGEKGDNGDIGLPGRDGLDGQK 224
           +PGAPG P           PGM   PG+     G+P +    G  G    PG  G     
Sbjct: 508 IPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYNTS 567

Query: 225 GDQGPIGPVGLMGPTGY 275
                  P G+  P GY
Sbjct: 568 ESSNLNAPPGVSMPNGY 584



 Score = 31.1 bits (67), Expect = 0.068
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 154 PGKPIS-PCNPGVPSIPGSPGR---PGAPGKPVLPFNPDRPGNPRSP 26
           PG P   P  P VP++PG PG    PGAPG     +N     N  +P
Sbjct: 533 PGMPAPFPGYPAVPAMPGIPGATAPPGAPGS----YNTSESSNLNAP 575



 Score = 29.9 bits (64), Expect = 0.16
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
 Frame = -1

Query: 154 PGKPISPCNPGVP--SIPGSPGRPG---------APGKPVLPFNP-DRPGNPRSPF*PGD 11
           P  P +   PGVP   IPG+PG P           PG  + P  P   PG P  P  PG 
Sbjct: 492 PLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGI 551

Query: 10  PG 5
           PG
Sbjct: 552 PG 553



 Score = 29.5 bits (63), Expect = 0.21
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 39  FPGLSGLKGNTGLPGAPGRPGEPGMDGTPGLQGEIGFPGLQGEKG 173
           FPG   +    G+PGA   PG PG   T         PG+    G
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNG 583



 Score = 28.7 bits (61), Expect = 0.36
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
 Frame = -1

Query: 154 PGKPISPCN--PGVPSI---------PGSPGRPGAPGK-PVLPFNPDRPGNPRSPF*PGD 11
           PG P+ P    PG+P++         PG    PG P   P  P  P  PG P +   PG 
Sbjct: 501 PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGA 560

Query: 10  PG 5
           PG
Sbjct: 561 PG 562



 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +3

Query: 15  PGQKGDRGFPGLSGLKGNTGLPGAPGRPGEPGMDGTPGLQGEIGF 149
           PG       PG+ G     G PG+        ++  PG+    G+
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGY 584


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.090
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 154  PGKPISPCNPGVPSIPGSPGRPGAPGKPVLPFNPDRPG 41
            P K   P NPG PS       P AP   V P  P  PG
Sbjct: 1427 PLKASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPG 1464



 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 400  PSIPLS-PF*PSAPVIPGGPTSPLSP 326
            P  P+S P  PSAP +P GP S   P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 108 GMDGTPGLQGEIGFPGLQGEKGDNGDIGLPGRDGLDGQKGDQGP 239
           G +G P L+ EI  P L    G+  D+  P   G      D GP
Sbjct: 514 GQNGEPALKSEIVMPVLLDSTGNQIDVSHPSEKGWRKLLLDNGP 557


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 121 VPSIPGSPG--RPGAPGKPVLPFNP 53
           +PSIPG      P  P  P LPFNP
Sbjct: 154 MPSIPGFGNLPNPAMPPIPFLPFNP 178


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 73  PVLPFNPDRPGNPRSPF*PGDP 8
           PV P   D P NP +PF P +P
Sbjct: 266 PVYPSMKDVPNNPFTPFSPINP 287


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 123 PGLQGEIGFPGLQGEKGD 176
           PGL+  +G P  QG+K D
Sbjct: 4   PGLRSGVGLPSQQGQKHD 21


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 290  SLWTWVTRGSHQSNWT 243
            +LWT +    H+SNWT
Sbjct: 1350 ALWTSLALSRHKSNWT 1365


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 151 GKP-ISPCNPGVPSIPGSPGRPGAPGKPVLPFNP 53
           G P + P  PG+     SP     PG PV+P  P
Sbjct: 285 GAPLVPPPPPGMVMASPSPAAATIPGAPVMPNIP 318



 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 154 PGKPISPCNPGVPSIPGSPGRPGAP 80
           PG  ++  +P   +IPG+P  P  P
Sbjct: 294 PGMVMASPSPAAATIPGAPVMPNIP 318


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 150 PGLQGEKGDNGDIGLPGRDGLDGQKGDQGPIGPVGLMGPTGYPGPKG-DRGLP 305
           P ++G       +  P   G+   +   G  GPV  +G T  P P G  RG P
Sbjct: 88  PSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAP 140


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = -2

Query: 273 NPWVPSIQLDLLGLDRLFAHLDRLYQEVLYLRCHLFHLVIRENLFLLAILECRPYRVLQD 94
           N W+P ++LD L   ++F       + +L     +   +  E   LL      P  V ++
Sbjct: 459 NEWIPDVELDDLHPKKVFMRETITRELILSYYTRISDSLPEELRCLLGEQPSGPNFVYEN 518

Query: 93  AQAHQVNQCYLSILIDPGIHDPLFDLVIL 7
            + H + Q    I+    +H PL +L I+
Sbjct: 519 -ETHPLYQQSSQIIEALRLHKPLEELDII 546


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 257 DGTHGLPRSKGRPRSS 304
           DG   LPR +GRPR S
Sbjct: 479 DGMTLLPRKRGRPRKS 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,655
Number of Sequences: 5004
Number of extensions: 39334
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)