Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P15
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.6  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   6.2  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    24   8.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    24   8.2  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    24   8.2  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   8.2  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 308  WAPQMSRYICKAKEEMD*TISYLYLVQIIDFL 403
            W PQ+ +Y  ++ E    ++++ Y+ QI+  L
Sbjct: 1404 WNPQLLQYTMRSMESYPVSVTFFYVPQIVQSL 1435


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +2

Query: 92   PVYVLFRLKILLSVQERITC*YLRKKLSLK--VTR*SEGTRIIRIWIRNSELSRVL*RVT 265
            P++      + L   E   C   R +L+L   +       R I+ W+R SEL  VL    
Sbjct: 3606 PLFNTIPFPLFLEKDESFDCLVRRCQLTLASMIPYHQTSLREIKKWLRRSELFNVLFTYN 3665

Query: 266  CHGQTLK 286
             H   +K
Sbjct: 3666 LHPSVIK 3672


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 386 GLNISMR*FSPFPLSLCKCNVTF 318
           G N  M  F  FPL L  C +TF
Sbjct: 166 GWNYFMNYFVTFPLELTTCAITF 188


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 318 KCHVTFAKRKRKWTELSHTY 377
           K HVT    K++WT+ +H +
Sbjct: 455 KVHVTAVVDKKEWTDKNHIF 474


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 37  ALTLHKMKCKXXXXXXXVTCVCFIQTKDFTLGTR 138
           +L+ H   CK        TC  FI  KD+  GTR
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC--FISAKDYIDGTR 466


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 220 MDSKQRIIKGIIAR--DLSRTDAEVTLKDGGVGASNVTLHLQSERGNGLNY 366
           ++  +  IK +I    D   T  +V LKDGG+    +T     + G+G+ Y
Sbjct: 26  IERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQIT-----DNGSGIQY 71


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 320 FEAPTPPSLRVTSASVRDRS-RAIIPLI 240
           FEA  P SL +    +RD+S + ++P+I
Sbjct: 180 FEAGIPASLPIAKHFIRDKSGQPVLPII 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,178
Number of Sequences: 5004
Number of extensions: 29475
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)