Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P15
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     29   1.1  
11_01_0578 + 4614348-4614398,4614693-4614908                           28   3.5  
11_01_0589 - 4682253-4682468,4682763-4682813                           27   4.6  
08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925     27   4.6  
06_03_0034 - 15727569-15727826,15728483-15728713,15728789-157291...    27   6.0  
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816...    27   6.0  

>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 88  LIKELKLIYTSFCATLKHIFKVMFDR 11
           L K L+ IYT  C ++  +FK MFDR
Sbjct: 565 LSKSLEAIYTVACDSVSPLFKEMFDR 590


>11_01_0578 + 4614348-4614398,4614693-4614908
          Length = 88

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 335 KCNVTFEAPTPPSLRVTSASVRDRSRAI--IPLIIRCF 228
           K N T  APTP SL++ ++SVR  +  +  +P+ IR F
Sbjct: 36  KLNFTVLAPTPMSLQLANSSVRYPAGIVDDVPVKIRDF 73


>11_01_0589 - 4682253-4682468,4682763-4682813
          Length = 88

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 335 KCNVTFEAPTPPSLRVTSASVRDRSRAI--IPLIIRCF 228
           K N T  APTP SL++  +SVR  +  +  +P+ IR F
Sbjct: 36  KLNFTVLAPTPMSLQLADSSVRYPAGIVDDVPVKIRDF 73


>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
          Length = 266

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 RDLSRTDAEVTLKDGGVGASNVTLHLQSE 345
           RDL RT   +TL+  GVG  ++  HL ++
Sbjct: 148 RDLERTVERMTLEGLGVGEDHIASHLAAQ 176


>06_03_0034 -
           15727569-15727826,15728483-15728713,15728789-15729151,
           15729260-15729413,15729997-15730275,15730328-15730770
          Length = 575

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 335 KCNVTFEAPTPPSLRVTSASVRDRSRAI--IPLIIRCF 228
           K N T  APTP  L++  +SVR+ +  +  +P+ IR F
Sbjct: 314 KLNFTVLAPTPMRLQLADSSVRNPTGIVENVPVKIRDF 351


>03_02_0404 -
           8165211-8165318,8165397-8165733,8166031-8166242,
           8166419-8166526,8166676-8166783,8166884-8166993,
           8167122-8167228,8167349-8167566,8167674-8167841,
           8168033-8168151,8168438-8168525,8168655-8168849,
           8168968-8169271,8169363-8169480,8170034-8170133,
           8170283-8170468
          Length = 861

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 267 QVTRYNTLDNSLFRIHIRIILVPSDQRVTFNDNFFR 160
           + T Y T DNS+    +  +   SD+ V FN N ++
Sbjct: 370 EATVYQTADNSICAAFLANVDAQSDKTVKFNGNTYK 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,640
Number of Sequences: 37544
Number of extensions: 162041
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)