Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P15
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_54033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   3.6  
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)                   27   6.2  
SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)                      27   8.2  
SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)                   27   8.2  

>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 280 AEVTLKDGGVGASNVTLHLQSERGNG 357
           AE+  KD GVG  + TL  +  RGNG
Sbjct: 404 AEIAFKDVGVGVGDNTLVFEGIRGNG 429


>SB_54033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 136 RTNNLLISTEKVVVKGYPLIRRDKDYTYMDSKQRI 240
           R+NN  I++   + K Y L++ + +  ++DSK  I
Sbjct: 18  RSNNNTINSNSFMKKAYTLVKEESEMAHIDSKVHI 52


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 184 YPLIRRDKDYTYMDSKQRIIKGIIARDLSRT 276
           YPL   +++  ++D   RIIK II R + RT
Sbjct: 386 YPLETSEREKEFVDVHGRIIKTIITRSVIRT 416


>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
          Length = 546

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 284 K*LLKMAAWAPQMSRYICKAKEEM 355
           K +L+MA W P +S   CKA EE+
Sbjct: 169 KKMLEMAPWHPFLSTKGCKASEEI 192


>SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)
          Length = 697

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 100 IHRLLIKELKLIYTSFCATLKHIF 29
           I  +  K L  ++TSFC+ L+H+F
Sbjct: 91  IRNIARKSLFALWTSFCSDLQHLF 114


>SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)
          Length = 161

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +1

Query: 145 NLLISTEKVVVKGYPLIRRDKDYTYMDSKQRIIKGIIARDLSRTDAEVTLKDG---GVGA 315
           ++L+S  +VV K +  + +D+      S QRI  G++ R+   T   ++++DG   G   
Sbjct: 40  HVLVSPVRVV-KRFVDLTQDEVSDLFISSQRIA-GVVEREFGATSLTISIQDGPEAGQSV 97

Query: 316 SNVTLHL 336
            +V +H+
Sbjct: 98  QHVHVHI 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,136
Number of Sequences: 59808
Number of extensions: 198412
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)