Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P13
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    31   0.077
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    26   2.9  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   6.7  

>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 313 GSSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNKHDSSV 438
           G   G D +  +  SF   G KKK   +++N+S  N  D+SV
Sbjct: 105 GDGSGTDSISVIKKSFFKSGRKKKDVPKSRNVSRSNGADTSV 146


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 268 HVKNNGG*NKHVLRRGSSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNKHDSS 435
           +  NNG  N H    G S+ ++  +    SFN    K+   ++N N SN   H ++
Sbjct: 695 YAPNNGMMNMHYPMYGDSRRSNSQR----SFNSSNGKRSNVHKNNNASNTFSHSNA 746


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 352 SSFNLLGHKKKTKNRNKNISNVNKHDSSV*NNNICI 459
           ++ N+LGHKK   +  + +  +++ ++ +  N +CI
Sbjct: 9   ATLNVLGHKKNGSSSIQELIEMDEEEAEMNQNVVCI 44


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 377 RRKQKIETRTFQMLISMIQAFKTITYVYKRLSGTL 481
           R+  K+  +TF +        K+I Y++KR+S TL
Sbjct: 571 RQSYKMLLQTFSIKSEYQVVLKSIKYLFKRVSETL 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,718
Number of Sequences: 5004
Number of extensions: 39663
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)