Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P13
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663     30   1.3  
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           28   3.9  
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220     27   6.8  
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905...    27   8.9  
07_01_0223 - 1642553-1643676,1643725-1644541                           27   8.9  

>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
          Length = 741

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 374 CPNKLKLLIRHLRTSFP*LDPLLNTCLFYPPL 279
           CPNK K  I H R +FP   P + + L +PPL
Sbjct: 294 CPNKSKQPI-HSRLTFPKQAPSIQSRLIFPPL 324


>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 217 VAKNTALWMASLYFGLVHVKNNGG*NKH 300
           V+KN +  MAS Y GL++  NNG    H
Sbjct: 707 VSKNFSTAMASQYLGLINDHNNGDPTNH 734


>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
          Length = 1053

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 290 YPPLFFTCTRPKYNEAIQSAVFFATYFTGV 201
           +PP F      KY+E++  A F   Y TG+
Sbjct: 233 WPPRFRPTITEKYDESVNPAEFLQIYTTGI 262


>09_02_0420 +
           9051728-9051754,9053244-9053530,9055263-9055500,
           9057010-9057204,9058075-9058339,9058520-9058827
          Length = 439

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 373 VLIN*NC*SDI*ERRFPDLTLSLTHVCFIRHCSLHAQDRSITKPSKVRY 227
           VL N N    +  R F D+  S    C+I HCS    DR I   +K R+
Sbjct: 210 VLQNYNAADRLSNRTFLDVVKSF---CYIAHCSPETVDRHIFMVAKERW 255


>07_01_0223 - 1642553-1643676,1643725-1644541
          Length = 646

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 193 FLITPVK*VAKNTALWMASLYFGLVHVKNNGG*NKHV 303
           F I P K  A  +A W  + Y GL + KNNG  N H+
Sbjct: 100 FFIAPSKNFA--SAFW--TQYLGLFNNKNNGDPNNHI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,876
Number of Sequences: 37544
Number of extensions: 204898
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)