Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P13
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)             31   0.74 
SB_39141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
          Length = 205

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 201 HSCEVGSEKYRTLDGFVILRSCACKEQWRIKQTCVKERVK 320
           HSCE GS KY  L GF  + SC       +    VK R++
Sbjct: 45  HSCEFGSAKYYALCGFGGILSCGLTHTAVVPLDLVKCRIQ 84


>SB_39141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 349 ISSFNLLGHKKKTKNRNKNISNVNKHDSSV*NNN 450
           I SFN   +     N N N +N N ++++  NNN
Sbjct: 77  IDSFNFCNNNNNNNNNNNNNNNNNNNNNNNNNNN 110


>SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 271 VKNNGG*NKHVLRRGSSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNKHDSSV*NNN 450
           +  N   NK    + S+  ND  K   ++ N   +     NRN+N  N+N ++ ++ +NN
Sbjct: 54  INGNNNNNKSNDNKDSNNNNDRNKKNNNNNNNSNNNNNNNNRNQN--NINSNNKNINSNN 111


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 361  NLLGHKKKTKNR--NKNISNVNKHDSSV*NNNICI 459
            N + ++  T N   N N S++N ++SS+ NNN  I
Sbjct: 1763 NSINNRNNTNNNSINNNNSSINNNNSSINNNNSSI 1797


>SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 271 VKNNGG*NKHVLRRGSSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNKHDSSV*NNN 450
           +  N   NK    + S+  ND  K   ++ N         N N+N +N+N +++++ +NN
Sbjct: 35  INGNNNNNKSNDNKDSNNNNDRNK---NNNNNNNSNNNNNNNNRNQNNINSNNNNINSNN 91


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 316 SSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNKHDSSV*NNN 450
           SS  N+      +S +   +    KN N N SN N ++S+  NNN
Sbjct: 55  SSNNNNTTTNNNNSNSSNNNNNNNKNNNNNNSNNNNNNSNTNNNN 99


>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 373 HKKKTKNRNKNISNVNKHDSSV*NNNIC 456
           + ++T N N+N +N  + D++  NNN C
Sbjct: 138 NNRRTDNNNRNNNNNRRTDNNYRNNNNC 165


>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 316 SSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNKHD 429
           S + +DVL  ++    +L  K  T +R+  +  +N HD
Sbjct: 382 SGESSDVLGSILDGIEVLNDKHVTISRDGRVVKLNSHD 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,988
Number of Sequences: 59808
Number of extensions: 272865
Number of successful extensions: 1587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)