Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P13
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    29   2.5  
At2g38690.1 68415.m04751 hypothetical protein                          27   7.5  
At5g56290.1 68418.m07026 peroxisomal targeting signal type 1 rec...    27   9.9  

>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 355 SFNLLGHKKKTKNRNKNISNVNKHDSSV*NNNIC 456
           S  +LGHK   KN N N++  N H  S+   ++C
Sbjct: 10  SLQILGHKSNQKNPNPNVAFTN-HSLSLSTPSLC 42


>At2g38690.1 68415.m04751 hypothetical protein 
          Length = 236

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 207 CEVGSEKYRTLDGFVILRSCACKEQWRI 290
           C  G    R+ DGFVI   C C++ +R+
Sbjct: 164 CGGGMRIERSGDGFVIRLKCRCRQAFRV 191


>At5g56290.1 68418.m07026 peroxisomal targeting signal type 1
           receptor (PEX5) identical to GI:3603353; contains Pfam
           profile PF00515 TPR Domain
          Length = 728

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 313 GSSQGNDVLKCLISSFNLLGHKKKTKNRNKNISNVNK 423
           GSS  ++ L  L ++  LLG   KT+ R K I N N+
Sbjct: 17  GSSSSSNPLGALTNA--LLGSSSKTQERLKEIPNANR 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,160,111
Number of Sequences: 28952
Number of extensions: 190564
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)