Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P12
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   237   3e-63
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             234   4e-62
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    33   0.10 
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    29   2.2  
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi...    29   2.9  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   3.8  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    28   5.1  
At5g07820.1 68418.m00896 expressed protein                             27   6.7  
At1g78170.1 68414.m09109 expressed protein                             27   6.7  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    27   6.7  
At5g32600.1 68418.m03877 hypothetical protein                          27   8.9  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   8.9  
At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) simi...    27   8.9  
At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) simi...    27   8.9  
At2g43795.1 68415.m05444 hypothetical protein                          27   8.9  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    27   8.9  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  237 bits (581), Expect = 3e-63
 Identities = 122/191 (63%), Positives = 143/191 (74%), Gaps = 4/191 (2%)
 Frame = +3

Query: 12  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 191
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 192 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 365
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 366 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRXV--VKRLLPAKEGKENAKPRYK 539
            ++PGLTD E PR  GPKRASKIRKLFNLKKEDDVR  V   +R    K+GKE +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176

Query: 540 APKIQRLVTPV 572
           APKIQRLVTP+
Sbjct: 177 APKIQRLVTPL 187


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  234 bits (572), Expect = 4e-62
 Identities = 119/191 (62%), Positives = 143/191 (74%), Gaps = 4/191 (2%)
 Frame = +3

Query: 12  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 191
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 192 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 365
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 366 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRXV--VKRLLPAKEGKENAKPRYK 539
            ++PGLTD E PR  GPKRASKIRKLFNL KEDDVR+ V   +R    K+GK+ +    K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176

Query: 540 APKIQRLVTPV 572
           APKIQRLVTP+
Sbjct: 177 APKIQRLVTPL 187


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 381 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRXVVKRL--LPAKEGKENAK 527
           + +G V ++   ++A +  K   +KKEDDVR+  +KRL  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +3

Query: 279 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 452
           G ++    RG +   + S  AL  +  GA   PG      ++P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 453 KKEDDVRRXVVKRLLPAKEG 512
           K + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1155

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +3

Query: 51  KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 230
           K  E    +++R+   +R  AE+  +LLG + K   LR  G  D+    + Q  +  +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654

Query: 231 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 332
            + +  G + Y    D ++ +K       D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 369 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 461
           E+PGL D  V   L PK+ ++++KL   K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 126 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 293
           DL G E     L  AG   K+G  + + +LT   V   +SKG + + P RD +  R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 403 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 293
           + TSPSVSP +       +   K  R++    P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197


>At1g78170.1 68414.m09109 expressed protein 
          Length = 221

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 525 LHFPCPL-WQVKGVLQXSDAHRLLFLN*IICGF*THAWDLD 406
           LH P P  WQ KG  + SD HR    + +I G    + DL+
Sbjct: 61  LHTPLPSDWQTKGYSRTSDEHRAYPKDPVIFGQPKMSLDLE 101


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 48  QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 143
           +KL+ EV DE KLR+ YE++       D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At5g32600.1 68418.m03877 hypothetical protein
          Length = 388

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 432 IRKLFNLKKEDDVRRXVVKRLLPAKEGKENAKPRYKAPKIQRLVTPV 572
           +R+++  KKED  RR   + +LP + G      R   P     +TPV
Sbjct: 164 LREVYAKKKEDKERRLAERNVLPKRVGSRGDPRRGSLPD---AITPV 207


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 177 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 4
           Y+   G H    R+L+DL   Q       R  AC H P  ++S I L    R+T  LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487


>At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) similar
           to ethylene receptor GB:AAC31123 [Malus domestica],
           identical to putative ethylene receptor GB:AAD02485
           [Arabidopsis thaliana]; Pfam HMM hit: response regulator
           receiver domain, signal C terminal domain
          Length = 766

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 390 GEVPRRLGPKRASKIRKL-FNLKKEDDVRRXVVKRLL 497
           G  P    P   S +R L   L  +DDV R V KRLL
Sbjct: 625 GNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLL 661


>At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) similar
           to ethylene receptor GB:AAC31123 [Malus domestica],
           identical to putative ethylene receptor GB:AAD02485
           [Arabidopsis thaliana]; Pfam HMM hit: response regulator
           receiver domain, signal C terminal domain
          Length = 766

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 390 GEVPRRLGPKRASKIRKL-FNLKKEDDVRRXVVKRLL 497
           G  P    P   S +R L   L  +DDV R V KRLL
Sbjct: 625 GNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLL 661


>At2g43795.1 68415.m05444 hypothetical protein
          Length = 170

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 261 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 440
           YR + D ER  K  +G    +++S       RKG +E   +   E+PR    KR S IRK
Sbjct: 54  YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 33  PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 200
           P   CQ +  V D  +   FYEK  G E+       E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,254
Number of Sequences: 28952
Number of extensions: 251150
Number of successful extensions: 650
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)