Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P11
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   4.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   5.4  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    25   5.4  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   7.1  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   7.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   9.4  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   9.4  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.4  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 92  DNVDQVYDAWDVKVNGAIYVWQ 27
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 20/86 (23%), Positives = 36/86 (41%)
 Frame = +1

Query: 79  WSTLSTSRHLTIIHLNVTPKRRTTLTPIYCTAEPRSFYKTPTLL*ITGFKMVRLPNKTCP 258
           WS +   R   I     TP++R+  +P+   A+ R    +  +  +   K   +P    P
Sbjct: 297 WSIVPEFREEFIAKTRKTPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-P 355

Query: 259 WSSVTTGRTWKLESERGVNFRSSTDT 336
            SS T+ R     + + V   S+ +T
Sbjct: 356 ASSTTSARDQTPSTPKDVGSPSTAET 381


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 51  YFDVPSIINLVDIVNIQAFDYYTPERNPEEAD 146
           Y D P I+  V  +N+   D  T + NP + D
Sbjct: 68  YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
 Frame = +2

Query: 278 DVRGSSSQSEV*ISGVPPIHADKGGEGGPYTTVQGL-------LSYPEICAKLINPNQYG 436
           D+  +  +S+  I  +P I  +  G  G  TT++G+       LS  +   K   P  Y 
Sbjct: 99  DLNRTVVKSQEAIVSIPEIQLEIPGRLGQLTTIEGILSNVVDDLSKEQESRKESAPQLYD 158

Query: 437 E-RPHLRKVNDPCIRFGTYAFRLPDDPGEGGFW 532
           +    + KVN   +R G+  F +  D   G  W
Sbjct: 159 QINAFIEKVNS--LRSGSVPFTITVDDITGNSW 189


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 123 ERNPEEADYTDTDLLHRRTAILLQNADAP 209
           +RNPEE+ Y  T LL   T  L+     P
Sbjct: 285 KRNPEESIYFSTILLREETKSLISPKKLP 313


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 425 NQYGERPHLRKVNDPCIRFGTYAFRLPDDPGE 520
           N + E+PHLRK     + +  YA  L   P E
Sbjct: 219 NDFWEKPHLRKPAFTSLLYAIYASALLATPVE 250


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 81  VDIVNIQAFDYYTPERNPEEADYTDTDLLHRRTAILLQNADAPMNYWIQNGAPTQ 245
           V+  +++A   Y+P +NP++   TD++           +AD P     Q GA TQ
Sbjct: 289 VEYESLKAAVTYSPSQNPKKVAETDSESRKSSFQSSYNDADRP----FQVGAQTQ 339


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 105 FDYYTPERNPEEADYTDTDLLHRRTAILLQN 197
           F+Y TP++     D  +T L++ +T  ++ N
Sbjct: 106 FEYLTPKKPIRAPDLLETGLIYAKTIHIITN 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,924
Number of Sequences: 5004
Number of extensions: 49454
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)