Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P11
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0894 - 8797302-8797355,8798393-8799082,8799201-8799315,879...    29   3.1  
05_01_0369 + 2907180-2907764,2907899-2908276                           28   4.1  
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050...    28   4.1  
01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787...    28   4.1  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    28   5.4  
06_03_0773 - 24493772-24494252,24494377-24495758                       27   9.5  

>08_01_0894 -
           8797302-8797355,8798393-8799082,8799201-8799315,
           8799955-8800082
          Length = 328

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 LPNKTCPWSSVTTGRTWKLESERGVNFRSSTDTRR 342
           LP+ +CP    +  RTW  E + G N    +D +R
Sbjct: 35  LPSFSCPVMMESIYRTWMRERDSGANLEELSDLQR 69


>05_01_0369 + 2907180-2907764,2907899-2908276
          Length = 320

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 159 RCQCSPPLRGYVQVYNSQM 103
           RC  SPP RG V VY S M
Sbjct: 48  RCHASPPRRGAVAVYPSDM 66


>03_05_0101 -
           20803546-20803800,20803907-20804700,20804788-20805042,
           20805143-20805263,20805716-20805768,20805979-20806239,
           20806734-20806784,20806900-20807148,20807257-20807479,
           20807737-20807910
          Length = 811

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 332 IHADKGGEGGPYTTVQGLLSYPEICAKLINPNQYGERPHLRKVND 466
           +HA+  G+GG +     +  Y ++C   + PNQ  E   + + ND
Sbjct: 125 LHANDDGDGGTFALYSLISRYAKVC---LIPNQQAEDELVTRYND 166


>01_01_0995 +
           7875273-7875495,7876196-7876274,7876422-7876536,
           7878507-7878761
          Length = 223

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +2

Query: 347 GGEGGPYTTVQGLLSYPEICAKLINPNQYGERPHLRKVNDPCIR 478
           GG GG Y T QG  SYP     ++   Q    P L    DP  R
Sbjct: 22  GGGGGEYGTFQGPPSYPPPRPPVVGYPQPAPPPGLYGQGDPYYR 65


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 425 NQYGERPHLRKVNDPCIRFGTYAFRLPDDP 514
           +Q+G++   R + D   RFG +A  L DDP
Sbjct: 487 SQFGQKGRYRNLLDMNARFGGFAAALVDDP 516


>06_03_0773 - 24493772-24494252,24494377-24495758
          Length = 620

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 347 GGEGGPYTTVQGLLSYPEICAK-LINPNQYGERPHLRKV 460
           GG G  Y  +   L  P+I  K LI  N+Y ER  L +V
Sbjct: 477 GGFGEVYHGMAKSLQPPDIAVKKLITSNEYSEREFLNEV 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,770
Number of Sequences: 37544
Number of extensions: 338326
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)