Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P11
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   30   1.4  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_23338| Best HMM Match : Homeobox (HMM E-Value=3.1e-26)              27   7.3  
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)            27   7.3  
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)                     27   7.3  
SB_39949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_24827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)                       27   9.6  
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)              27   9.6  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_21416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 117 TPERNPEEADYTDTDLL---HRRTAILLQNADAPMNYWIQNG 233
           TP+     +   D D+L   HRR  +L  N+D P+ ++I++G
Sbjct: 139 TPQDFRRVSAIVDVDILPETHRRVRLLKHNSDKPLGFYIRDG 180


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 34  T*IAPFTLTSQAS*TWSTLSTSRHLTIIHLNVTPKRRTTLT 156
           T I P T+T+  + T +T  T+ + TI+ + +T    TT+T
Sbjct: 515 TTIVPITITTNYTTTVTTTITTNYTTIVTITITTNYTTTVT 555


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = +1

Query: 46  PFTLTSQAS*TWSTLSTSRHLTIIHLNVTPKRRTTLTPIYCTAEPRSFYKTPTLL*ITGF 225
           P+  T+  + T +T +T+   T  +   T    TT TP   T  P +   TPT    T  
Sbjct: 132 PYATTTTPNTTTTTPNTTT--TSPNATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPN 189

Query: 226 KMVRLPNKTCPWSSVTT 276
                PN T    + TT
Sbjct: 190 TTTNTPNATTTTPTATT 206



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/77 (28%), Positives = 30/77 (38%)
 Frame = +1

Query: 46  PFTLTSQAS*TWSTLSTSRHLTIIHLNVTPKRRTTLTPIYCTAEPRSFYKTPTLL*ITGF 225
           P T T+  + T +T +T+   T  +   T    TT TP   T  P +   TP     T  
Sbjct: 146 PNTTTTSPNATTTTPNTTT--TTPNTTTTTPTATTTTPTATTTTPNTTTNTPNATTTTPT 203

Query: 226 KMVRLPNKTCPWSSVTT 276
                PN T    + TT
Sbjct: 204 ATTTTPNATTTTPNTTT 220



 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +1

Query: 52  TLTSQAS*TWSTLSTSRHLTII-HLNVTPKRRTTLTPIYCTAEPRSFYKTPTLL*ITGFK 228
           T T+  +  ++T +T    T   +   T    TT TP   T  P +   TPT    T   
Sbjct: 124 TTTTTTTTPYATTTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTTTTTPTATTTTPTA 183

Query: 229 MVRLPNKTCPWSSVTT 276
               PN T    + TT
Sbjct: 184 TTTTPNTTTNTPNATT 199


>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 324 FHRYTPIRVVKVVLIPQFKVY*ATQKFAPNLLTPINTESVLIFVRSTILAY 476
           F RY P+R  K+++  ++     TQ        P+    +++F R   + Y
Sbjct: 523 FTRYNPVRYAKLIVFTRYNPVRYTQLMVFTRYNPVRYAQLMVFTRHNPVRY 573



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = +3

Query: 324 FHRYTPIRVVKVVLIPQFKVY*ATQKFAPNLLTPINTESVLIFVRSTILAY 476
           F RY P+R  ++++  ++     TQ        P+    +++F R   + Y
Sbjct: 192 FTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRY 242



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = +3

Query: 324 FHRYTPIRVVKVVLIPQFKVY*ATQKFAPNLLTPINTESVLIFVRSTILAY 476
           F RY P+R  ++++  ++     TQ        P+    +++F R   + Y
Sbjct: 206 FTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRYAQLMVFTRYNPVRY 256


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 338 ADKGGEGGPYTTVQGLLSYPEIC 406
           A KGG+G PYT   G ++Y EIC
Sbjct: 279 ATKGGQG-PYTKEAGYIAYFEIC 300


>SB_23338| Best HMM Match : Homeobox (HMM E-Value=3.1e-26)
          Length = 275

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 46  PFTLTSQAS*TWSTLSTSRHLTIIHLNVTPKRRTTLTPI 162
           P T +S  + + S  STS  L+ +HLN +P   T  +P+
Sbjct: 52  PSTGSSPTADSSSENSTSPRLSPVHLNESPPESTACSPV 90


>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
          Length = 184

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 359 GPYTTVQGLLSYPEIC 406
           GPYT   G LSY EIC
Sbjct: 16  GPYTRESGFLSYYEIC 31


>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
          Length = 297

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = -1

Query: 341 RRVSVELRKFTPRSDSSFHVRPVVTDDQGQVLLGRRTILNPVIHRSVGVL*KDRGSAVQ* 162
           R V+   R  T R  ++   R VVT  +  V   RR I++    R        R SA   
Sbjct: 45  RVVTTRRRVVTQRRRATVRRRRVVTTRRRAVTRRRRAIVSRRRRRGSSSS-SQRSSATTG 103

Query: 161 IGVSVVRLFGVTFRCIIVKCL 99
             V +V  FG  F CI + C+
Sbjct: 104 SIVGIV--FGAIFACIFIGCI 122


>SB_39949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 481 KTYARIVDLTKMRTLSVLIGVNKFGANFWVA 389
           K +AR++  T +R + VL+ +  FG + W A
Sbjct: 17  KQFARLLIKTPVRIVVVLLSLGLFGVSIWEA 47


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 231  GAPTQQDLSLVISDHWTYVEARVRARCKFPE-FHRYTPI 344
            GA T  D+S    D WT V   V+ R   P+ + RY PI
Sbjct: 1062 GASTSVDMSAKDKDGWTVVHHCVQNREVRPDPYERYGPI 1100


>SB_24827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 103 HLTIIHLNVTPKRRTTLTPIYCTAEPRSFYKTPTLL*ITGFKMVRLPNKTCPWSS-VTTG 279
           HLT +  +V  K    L+PI    +  SF     +L +    +  LPN+     S V T 
Sbjct: 84  HLTEVLWDVKSKYAAALSPIIFVLQRSSFASILLVLCVGSADIAHLPNQIAACKSCVLTP 143

Query: 280 RTWKLES 300
           + W  E+
Sbjct: 144 QKWDHET 150


>SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 487

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 155 HRFTAPQNRDPSTKRR 202
           HRF AP N DP+T  R
Sbjct: 235 HRFIAPSNGDPNTSNR 250


>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
          Length = 582

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 52  TLTSQAS*TWSTLSTSRHLTIIHLNVTPKRRTTLTPIYCTAEPRSFYKT 198
           TL+   + + +T ST+R  T+  +N TP+ R + TP+  + EPRS  +T
Sbjct: 533 TLSPLNTPSGTTTSTAR-TTVNGVNGTPRTRRSTTPMN-SEEPRSSKRT 579


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 264  ISDHWTYVEARVRARCKFPEFHRYTPIRVVKVVLIPQFK 380
            +SDHW +    V     FP+  R + ++ V +  +  +K
Sbjct: 2567 VSDHWIHARMSVDGLAHFPDCSRVSKVKEVSIKGVLYYK 2605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,715,782
Number of Sequences: 59808
Number of extensions: 397870
Number of successful extensions: 974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)