Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_P11
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18970.1 68418.m02253 AWPM-19-like membrane family protein co... 34 0.052
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 29 2.6
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 29 2.6
At5g25475.2 68418.m03031 expressed protein 28 3.4
At5g25475.1 68418.m03030 expressed protein 28 3.4
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 28 3.4
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 28 4.5
At4g18550.1 68417.m02748 lipase class 3 family protein similar t... 28 4.5
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 28 4.5
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 28 4.5
At5g62510.1 68418.m07845 F-box family protein contains Pfam prof... 27 5.9
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 27 7.9
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 27 7.9
At1g30600.1 68414.m03743 subtilase family protein Strong similar... 27 7.9
>At5g18970.1 68418.m02253 AWPM-19-like membrane family protein
contains Pfam profile: PF05512 AWPM-19-like family
Length = 171
Score = 34.3 bits (75), Expect = 0.052
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 370 GIRTTFTTLIGVYRWNSGNLHLALTRASTYVQWSL 266
G+ T+ T +I V +W+S NLH A AS+ + WSL
Sbjct: 78 GMATSLTGIINVLQWDSPNLHSA--AASSLISWSL 110
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 33 NVNSSIYFDVPSIINLVDIVNIQAFDYYTP 122
N N +Y V I L+D VNI+A+D+Y P
Sbjct: 77 NYNGVVY-PVKFISELLDWVNIKAYDFYGP 105
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 344 KGGEGGPYTTVQGLLSYPEICAKLINPN 427
K GEGG + GLL + ++ K++NPN
Sbjct: 486 KIGEGGYGSIYVGLLRHTQVAIKMLNPN 513
>At5g25475.2 68418.m03031 expressed protein
Length = 282
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 244 NKTCPWSSVTTGRTWKLESER 306
+K C W S++ G+TWK +S R
Sbjct: 15 SKPCFWKSLSPGQTWKSKSMR 35
>At5g25475.1 68418.m03030 expressed protein
Length = 282
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 244 NKTCPWSSVTTGRTWKLESER 306
+K C W S++ G+TWK +S R
Sbjct: 15 SKPCFWKSLSPGQTWKSKSMR 35
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 48 IYFDVPSIINLVDIVNIQAFDYYTPERNP 134
+ + V +I + +D VNI A+D+Y P +P
Sbjct: 185 VEYPVKAIADNLDFVNIMAYDFYGPGWSP 213
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 54 FDVPSIINLVDIVNIQAFDYYTPERNP 134
+ V +I + +D VNI A+D+Y P +P
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGPGWSP 205
>At4g18550.1 68417.m02748 lipase class 3 family protein similar to
lipase [Dianthus caryophyllus] GI:4103627; contains Pfam
profile PF01764: Lipase
Length = 419
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1
Query: 272 VTDDQGQVLLGRRTIL 225
VTDDQG LLGRR I+
Sbjct: 135 VTDDQGTALLGRRDIV 150
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 496 EGIGPKTYARIVDLTKMRTLSVLIGVNKFG-ANFW 395
EGIG K R+++L R+ +++I N+F A W
Sbjct: 401 EGIGEKVKKRLIELEPKRSGNLVIVANRFAEARMW 435
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 164 TAPQNRDPSTKRRRSYELLDSKWCAY 241
+A +N DP T RRR E LD W A+
Sbjct: 84 SAMKNSDPETARRRR-ESLDRNWAAF 108
>At5g62510.1 68418.m07845 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 420
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 240 TQQDLSLVISDHWTYVEARVRARCKFPEFHR-YTPIR 347
+ QDL +IS+HW +V V K EF + +TP R
Sbjct: 210 SSQDLETIISEHWVFV-LEVGGSWKRIEFDQPHTPTR 245
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 45 SIYFDVPSIINLVDIVNIQAFDYYTP 122
S+ + V ++ + +D VN+ A+D+Y P
Sbjct: 188 SVLYPVSAVASSLDWVNLMAYDFYGP 213
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 33 NVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPEEADYTDTDLLHRRTAILLQNADAPM 212
+V + + V + +D VNI A+D+Y P + + T LH + + D+ +
Sbjct: 175 SVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSKFT--VPTAGLHVSSNNEGPSGDSGL 232
Query: 213 NYWIQNGAPTQQ 248
WI++G P ++
Sbjct: 233 KQWIKDGLPEKK 244
>At1g30600.1 68414.m03743 subtilase family protein Strong similarity
to gb|U80583 proteinase TMP from Lycopersicon esculentum
and is a member of the PF|00082 subtilase family
Length = 832
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 314 FTPRS-DSSFHVRPVVTDDQGQVLLGRRTILNPVIHRS 204
FTP + S+ ++D +G+ ++ +RT+LNP I +S
Sbjct: 629 FTPAAIASALSTTASLSDRKGEHIMAQRTVLNPDISQS 666
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,024
Number of Sequences: 28952
Number of extensions: 266655
Number of successful extensions: 725
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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