Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P10
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    29   0.67 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.5  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   1.5  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   2.0  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   3.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   4.7  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   4.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   6.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   8.2  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   8.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.2  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +1

Query: 307 YEFVTPLTSLVVVKPNE--TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLP 480
           Y   + +  + +V+ N+  T+  + E  ++PA  +++  S+P Y IS+ R  T+ L SLP
Sbjct: 483 YGHTSTIRCIKIVQGNQSTTDTDDVEKENRPASNDAN--SMPPYIISSSRDCTIRLWSLP 540


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 395 LFKNLRLHRSLYMIFPTLDQEP*LCNHSQVRN*PQILRTNTNSYLYQPI 541
           L K L+ HR  Y+IF    Q     NH+ ++   +I++T      Y+P+
Sbjct: 88  LLKELKKHRDSYVIFDCPGQVELFTNHNSLQ---KIIKTLEKELDYRPV 133


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 307 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISN 444
           Y F+T L+  ++++ +E + +    +++P    S    VPVY IS+
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISD 603


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 430 YDISNVRPGTVALQSLPSPQLTADTSYQYQQLSIPAYNRFG 552
           Y   NVR  ++ LQSLP+P L        +QL    +NR+G
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTL--------EQLESVPFNRYG 475


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 427 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 323
           +GP+ + I + PV       +H+F L  L+P  SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 187 DAPMGSFHVFLQERGPSVSCQNVSWYIHRLKLHRIQVLE 71
           DAP  + ++ L     S+  + +SWY+  ++LH +Q +E
Sbjct: 200 DAPNSNRNLLLNN---SMLQEKISWYLDTVELHLLQEIE 235


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 301 LKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDI----SNVRPGTVAL 468
           L Y+F+  +T   VV P   +     ++       SSF  V +Y I     +V  G VA+
Sbjct: 134 LVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIFATSKDVSIGPVAV 193

Query: 469 QSLPSPQLTAD 501
            SL + ++ A+
Sbjct: 194 MSLVTSKVIAN 204


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 491 NCGLGSDCRATVPGLTLEISYTGTD 417
           NC    + +    G+TLE++Y  TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 376  ESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPS 483
            E +D P  +E S  S+P+ D+SN   G + +   PS
Sbjct: 941  EDIDVP-LREGSLTSIPIDDVSN--SGDITMGEEPS 973


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 462 YGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFI 352
           Y   + V NI +       +LK+  I+ F + CIRFI
Sbjct: 682 YSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFI 718


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -2

Query: 367 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 212
           L+ + ++   P+ S   ++  S+   K SF   FP SC + +    +  P+I
Sbjct: 27  LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 367 VNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 507
           V+   +D P+  E+ F+ + V  + +V     +  + PSP L++  S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPAS 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,685
Number of Sequences: 5004
Number of extensions: 52682
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)