Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P10
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)                  29   3.7  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              28   4.9  
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               27   8.6  

>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
          Length = 421

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 439 SNVRPGTVALQSLPSPQLTADTSYQYQQLSIPAYNRFG 552
           S VR  T A+ SLP P +  D  +  +   +  + +FG
Sbjct: 234 SEVRKTTTAILSLPDPGIHPDEQHSEENTPVEGHRKFG 271


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 43  TINNPTELDTQVLGFCGVLDDGYTRRHFDKKLKV 144
           +++ P +    VLGF   + D Y  RH D++L +
Sbjct: 610 SVSMPVQSSQVVLGFLPQVTDSYLTRHIDRELNL 643


>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 509 YEVSAVNCGLGSDCRAT 459
           YEV  +NCGLG  C  T
Sbjct: 446 YEVQWINCGLGESCEPT 462


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 554  PPNLL*AGIDNCWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 426
            P + +   ++  W W  VS    G G  C  +VP   L I +T
Sbjct: 2657 PRSFIRGSMEGFW-WSYVSMTTVGYGDRCPVSVPARILSIGWT 2698


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 316 VTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQS-LPSP 486
           V+P TS++V + +  ++++ E  D P + +   +S P +D     P   ++ S +PSP
Sbjct: 789 VSPRTSVIVEESDAESSIDEEDEDAPEYIDQVSSSPPQHD---YMPTQASVSSPVPSP 843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,041
Number of Sequences: 59808
Number of extensions: 377373
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)