Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_P10
(587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g58340.1 68414.m06636 MATE efflux protein-related contains Pf... 32 0.25
At1g08460.1 68414.m00936 histone deacetylase family protein (HDA... 32 0.33
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp... 31 0.43
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf... 30 1.00
At3g51550.1 68416.m05645 protein kinase family protein contains ... 30 1.00
At5g19700.1 68418.m02343 MATE efflux protein-related contains Pf... 29 2.3
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR... 28 4.0
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 28 4.0
At2g38510.1 68415.m04732 MATE efflux protein-related contains Pf... 28 5.3
At5g56840.1 68418.m07092 DNA-binding family protein contains Pfa... 27 7.0
At2g47750.1 68415.m05961 auxin-responsive GH3 family protein sim... 27 7.0
At5g47000.1 68418.m05793 peroxidase, putative 27 9.3
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 9.3
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 27 9.3
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 27 9.3
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 9.3
At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /... 27 9.3
At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /... 27 9.3
>At1g58340.1 68414.m06636 MATE efflux protein-related contains Pfam
profile: PF01554 uncharacterized membrane protein family
UPF0013
Length = 532
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 518 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 426
W+WYE + CGL ++ RATV + + I T
Sbjct: 298 WWWYEFMIILCGLLANPRATVASMGILIQTT 328
>At1g08460.1 68414.m00936 histone deacetylase family protein (HDA8)
identical to HDA8 [Arabidopsis thaliana] GI:21360988low
similarity to SP|Q9Z2V5 Histone deacetylase 6 (HD6)
(Histone deacetylase mHDA2) {Mus musculus}; contains
Pfam profile PF00850: Histone deacetylase family;
supporting cDNA gi|21360987|gb|AF510167.1|
Length = 377
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 472 SLPSPQLTADTSYQY--QQLSIPAYNRFGGDLLTVLI 576
++P P T D Y+Y +L +PA RFG D++ +++
Sbjct: 235 NVPLPNGTGDRGYEYAMNELVVPAVRRFGPDMVVLVV 271
>At4g29140.1 68417.m04170 MATE efflux protein-related several
hypothetical proteins - Arabidopsis thaliana; contains
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 532
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 518 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 426
W+WYE+ V CGL + R+TV + + I T
Sbjct: 296 WWWYEIMIVLCGLLVNPRSTVAAMGVLIQTT 326
>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 502
Score = 30.3 bits (65), Expect = 1.00
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 518 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 426
W+WYE+ + CGL + +ATV + + I T
Sbjct: 273 WWWYEIMILLCGLLLNPQATVASMGILIQTT 303
>At3g51550.1 68416.m05645 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 895
Score = 30.3 bits (65), Expect = 1.00
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 364 AVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 507
A++ V+KP + +S V ++ ++ +P PQ+TAD S
Sbjct: 385 ALHPNPVNKPEYYDSLLNGVEIFKMNTSDGNLAGTNPIPGPQVTADPS 432
>At5g19700.1 68418.m02343 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 508
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 518 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 426
W+WYE+ V CGL D V + + I T
Sbjct: 276 WWWYEIMTVLCGLLIDPSTPVASMGILIQTT 306
>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1039
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -2
Query: 421 PMQTKILEKP--VYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLR 248
P + K L KP +Y + R++ H+V + K + + + LKL D +P L
Sbjct: 499 PSEQKFLWKPEEIYDVLARNIFLKHVVDITSKLQLISDVSSITHGLKLLHWDAYPLETLP 558
Query: 247 REYQ 236
+Q
Sbjct: 559 FSFQ 562
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/41 (46%), Positives = 19/41 (46%)
Frame = -1
Query: 182 SNGKFSCFSTGTGTFSFLSKCLLVYPSSKTPQNPST*VSSS 60
SN S FS TG FSFL SS TP P SSS
Sbjct: 322 SNASASPFSASTG-FSFLKSTASSTTSSTTPSAPPQTASSS 361
>At2g38510.1 68415.m04732 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 486
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 518 WYWYEVSAVNCGLGSDCRATVPGLTLEISYTG 423
++WYE+ CGL + +A+V + + I TG
Sbjct: 247 YWWYEIMLFLCGLLGNPKASVAAMGILIQTTG 278
>At5g56840.1 68418.m07092 DNA-binding family protein contains Pfam
domains, PF00249: Myb-like DNA-binding domain and
PF00098: Zinc knuckle
Length = 233
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 85 FCGVLDDGYTRRHFDKKLKVPVPVEKHENF 174
F G L DG + D+K VP E+H F
Sbjct: 72 FAGYLSDGLAHKTPDRKKGVPWTAEEHRTF 101
>At2g47750.1 68415.m05961 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 585
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 163 VFLQERGPSVSCQNVSWYIHRLKLHRIQVLECLALLDYLSYVQQQ 29
+ ++ S+ CQ ++ IHR K+ R+ + A L +SY++++
Sbjct: 188 ILCEDSNQSMYCQLLAGLIHRHKVMRLGAVFASAFLRAISYLEKK 232
>At5g47000.1 68418.m05793 peroxidase, putative
Length = 334
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 406 ILEKPVYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSC 254
IL YQ+ H +V T +V Q T+ TL+L F DCF C
Sbjct: 32 ILRTDYYQKTCPDFHK--IVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGC 80
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.1 bits (57), Expect = 9.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 316 VTPLTSLVVVKPNETNAVNAESVDKPAFQ-ESSFASVPVYDISNVRPGTVALQSLPSPQL 492
+ P+T L + PN T++ S P Q E S +S + D+S + G +A+ S +L
Sbjct: 22 IPPITRLSLPNPNFTSSRFHTSSSLPQSQIEGSISSSLLQDLSIIH-GVIAIASTSQGRL 80
Query: 493 TADTSYQYQQLSIP 534
+ + S+P
Sbjct: 81 ASVSMCTQYSTSVP 94
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 286 LSFQDCFPYSCLRREYQRHLFRPIIVLLLDTPRDAPMGSFHVFLQERGPSVSCQN 122
L F FP + ++ RHL +P ++ L+D + ++ F++ER V C N
Sbjct: 301 LMFSATFPVT-VKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEER-QKVHCLN 353
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 286 LSFQDCFPYSCLRREYQRHLFRPIIVLLLDTPRDAPMGSFHVFLQERGPSVSCQN 122
L F FP + ++ RHL +P ++ L+D + ++ F++ER V C N
Sbjct: 301 LMFSATFPVT-VKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEER-QKVHCLN 353
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 478 GVIAELRFLV*RWKYHIQGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTS 326
GV + +V + YH+ GP+ T + E Y+ +P ++ S L ++P TS
Sbjct: 596 GVTLHVSCVVGDFSYHMPGPLSTVVSE---YKMVPPAVVS--LYKVVPNTS 641
>At1g22660.2 68414.m02832 tRNA-nucleotidyltransferase, putative /
tRNA adenylyltransferase, putative similar to tRNA
nucleotidyltransferase [Lupinus albus] GI:1139585;
contains Pfam profile PF01743: polyA polymerase family
protein
Length = 603
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -1
Query: 521 CWYWYEVSAVNCGLGSDCRATVPGLTLEISYTGTD 417
C YW+ +A +G + + ++P + L+ + TD
Sbjct: 54 CGYWFSTNAAMTNVGEEDKQSIPSIELKENIELTD 88
>At1g22660.1 68414.m02831 tRNA-nucleotidyltransferase, putative /
tRNA adenylyltransferase, putative similar to tRNA
nucleotidyltransferase [Lupinus albus] GI:1139585;
contains Pfam profile PF01743: polyA polymerase family
protein
Length = 605
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -1
Query: 521 CWYWYEVSAVNCGLGSDCRATVPGLTLEISYTGTD 417
C YW+ +A +G + + ++P + L+ + TD
Sbjct: 54 CGYWFSTNAAMTNVGEEDKQSIPSIELKENIELTD 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,146
Number of Sequences: 28952
Number of extensions: 263936
Number of successful extensions: 715
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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