Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_P09
(410 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 31 0.37
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 29 1.1
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 2.6
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17) 27 4.5
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36) 27 7.9
SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0) 27 7.9
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 31.1 bits (67), Expect = 0.37
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +2
Query: 215 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDXSMFMWNEPVKN 391
+H N WMT ++ G +RQG ++ + L +L +++ + + VKN
Sbjct: 351 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRDKVGKAIASAKHVFYRTKVKN 409
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 215 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDXSMFMWNEPVKN 391
+H N WMT ++ G +RQG ++ L +L +++ + + VKN
Sbjct: 299 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 357
>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 215 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDXSMFMWNEPVKN 391
+H N WMT ++ G +RQG ++ L +L +++ + + VKN
Sbjct: 337 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 395
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 215 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDXSMFMWNEPVKN 391
+H N WMT ++ G +RQG ++ + L +L ++ + + VKN
Sbjct: 314 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRYKVGKAIARAKHVFYRTKVKN 372
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 28.3 bits (60), Expect = 2.6
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = -2
Query: 328 HS*SS*KLTIRVHEYLSLTLFVQT-VHFVSHPIRIIHMKVIHVSVKIDVFCEVRILVVFR 152
H+ S + I H + LF +T +H SHP ++ + I + I L+ R
Sbjct: 252 HTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIHTHSYSHALLFTR 311
Query: 151 *RAAHSFTPVDDNHTLISNFYPVIVHKHRVGGSFSH 44
H+ + H+L+ F + H H SF+H
Sbjct: 312 -TLIHTHS---HPHSLLFTFTIIRTHSHSHALSFTH 343
>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 197 NTYMYYLHMNYPYWMTDEVYGLNKERQGE 283
NT YY+H+NY + +D Y + G+
Sbjct: 66 NTSSYYIHLNYKDYESDYFYTIGSYNSGD 94
>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
Length = 722
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 28 SLHDEDD*SCHRPCAYEL 81
++HD+DD C R CA+ L
Sbjct: 117 TIHDDDDAECRRCCAFNL 134
>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 116 VIDWRKGVRRSLSEDDKYSYFTEDVDLNTY 205
+++WR G+ SLSEDD+ + E + L+ Y
Sbjct: 77 LLNWRSGI--SLSEDDQMCFHHEKLYLSRY 104
>SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)
Length = 407
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 220 MKVIHVSVKIDVFCEVRILVVFR*RAAHSFTPVDDNHTLISNFYPV 83
M + S +DV +RIL + R H+ + HTL ++ Y +
Sbjct: 353 MLAMEKSFVLDVLNTMRILAIHRRLKLHNEAEAQETHTLEASIYAI 398
>SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 1001
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 200 TYMYYLHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDXS 361
TY +YL ++ Y D V GL G+I+ LA L + ++ D S
Sbjct: 344 TYEFYLIRDHKYGSVDPVTGLWNGMVGDIITGEADMALATLTITASRSRVIDFS 397
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,598
Number of Sequences: 59808
Number of extensions: 208611
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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