Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P09
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17180.1 68416.m02191 serine carboxypeptidase S10 family prot...    31   0.23 
At5g43520.1 68418.m05321 DC1 domain-containing protein contains ...    27   4.9  
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...    27   6.5  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    27   6.5  

>At3g17180.1 68416.m02191 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II SP:P08819
           [Triticum aestivum] (Carlsberg Res. Commun.
           52:297-311(1987))
          Length = 478

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 77  NYYGIKVTDKSMVVIDWRKGVRRSLSEDDKYSYFTED----VDLNTYMYYLHMNYPYW 238
           +Y G  V DKS  V DW K VR     D  YS + E+    VD+   ++    N   W
Sbjct: 301 SYLGFGVNDKSPAVKDWFKRVRWFEGYDPCYSNYAEEYFNRVDVRLSLHATTRNVARW 358


>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 250

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +2

Query: 158 DDKYSYFTEDVDLNTYMYYLHMNYPYWMTDEVYGLNKERQG-----EILMYANSQLLARL 322
           +D + Y+ +D D  T+++           +E      E        + LM A  ++ A  
Sbjct: 165 EDLWMYYCKDCDYGTHLHSCAAYEDQGKEEEDEDEEGEASSPASRIKSLMKAQDEMAAMQ 224

Query: 323 RMERLSHKMCDXSMFMWNEPVKNGYW 400
              R+ +   + ++ +W+EP +  YW
Sbjct: 225 LEARIENDARNAALDLWDEPKRRYYW 250


>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
           putative very strong similarity to SP|P23413 ATP
           synthase alpha chain, mitochondrial (EC 3.6.3.14)
           {Brassica campestris}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF00306: ATP synthase ab C terminal, PF02874:
           ATP synthase alpha/beta family beta-barrel domain
          Length = 777

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 248 EVYGLNKERQGEILMYANSQLLARLRME 331
           +VYGLN+ + GE++++AN      L +E
Sbjct: 312 QVYGLNEIQAGEMVLFANGVKGMALNLE 339


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 266 KERQGEILMYANSQLLAR-LRME-RLSHKMCDXSMFMWNEPVK 388
           K  QG+  ++  +QLL+R +  E +  H+ C+  ++MW EPVK
Sbjct: 48  KALQGKSFIW--NQLLSRSIGFEVQTLHRPCNGDIWMWIEPVK 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,943,072
Number of Sequences: 28952
Number of extensions: 140279
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)