Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_P08
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.51
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 0.68
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 28 0.90
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 0.90
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 1.6
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 2.7
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 26 2.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 2.7
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 3.6
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 3.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 4.8
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 6.3
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 25 6.3
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 8.4
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 8.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 8.4
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 8.4
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.51
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 398 PMLQMQRLGPEQSPLGHPPAQRGLHLLSVRSIEYPGLQTH*LPSVQTPLMHGSEH 234
P+L +R+ E + +Q +LL + I+YP LPS LMH H
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCH 235
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 0.68
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 4 LGGQLPGNQPNYPNPSQYEIMVMLPNGTIT 93
+G +PG P NPSQ+ + PNGT T
Sbjct: 600 VGYPVPGYTPYMRNPSQHTSVAPSPNGTPT 629
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 13 QLPGNQPNYPNPSQYEIMVMLPNGTITYQPRPDPFYQPHK 132
Q+PG P+ PS E M+ +G + P P P P +
Sbjct: 176 QIPGPLPSGNVPSPAEFQAMMASGFPPFMPIPPPIGGPQE 215
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 0.90
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 7 GGQLPGNQPNYPNPSQYEIMVMLPNGTITYQPRPDPFYQPHKPNQPDH-HITPNRTNDLS 183
G P + P Y M P ++Y P Y +K QP +++ + ND
Sbjct: 730 GTATPSPVVSQQQPQPYAFPPMYPIPYVSYGYGTMP-YNNNKFGQPQQGYMSQSGFNDFP 788
Query: 184 SVQGGHVNGQNTQR 225
+ GGH N N Q+
Sbjct: 789 PIFGGHSNVYNRQQ 802
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +1
Query: 232 ECSEPCINGVCTEGNQCVCNPGYSMDLTDRRCKPRC 339
+C E C N C +G C G D C +C
Sbjct: 330 DCGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQC 365
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 379 LCICNMGYHKDTSVKGRAVCVKRIRRSLNYFLSKK 483
+CICN+ Y KD + + + + +L +++K+
Sbjct: 690 VCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQ 724
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 194 EAMLTDKTHNVSLNVLNRASMEFARKAINVSAIPDI 301
E + T H V+L+++N+ E R + +IP I
Sbjct: 70 EELQTGSVHQVALSIINKEQREEERYVFSTDSIPII 105
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 40 PNPSQYEIMVMLPNGTITYQPRPDPFYQPHKPNQPDHHITPNRT 171
P P+ Y M P T QP+ F QP + N P + P RT
Sbjct: 455 PQPTGY----MQPQRTGMMQPQRTGFSQPFESNNPFPVMQPQRT 494
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 100 PRPDPFYQPHKPNQPDHHITPNRTNDLSSV 189
P D FY PH P + PN LS+V
Sbjct: 590 PLHDKFYVPHSPPKYTMETYPNNVLSLSTV 619
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 3.6
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Frame = -3
Query: 408 FMVAHVTNAKIRS*TESIGTSTCTTGLAPSIGKIHRISGIADTLIAFRANSIDARFRTFR 229
+++ +TN +I + ES + +P IG +HR +A T F+
Sbjct: 257 WILGFITNKEIENSLESFRKHSNGNLSSPKIGGVHRRDAVA-TNPQSPIPGFYHGFQGLA 315
Query: 228 ETLCVLSVNMASLDRGQI---VGAVGGYVMIW--LVWFMRLVERIRSWLICD--SAVW*H 70
+ L+ N+ +L + GG V+I+ ++ F+R RI + CD + W
Sbjct: 316 TEVGTLTTNLFTLTLIWFLISLAIAGGIVIIFVLIIKFLRQT-RIIAKSSCDYITRYWFR 374
Query: 69 -YHNFILRWVRIVWLV 25
N +RWV + W V
Sbjct: 375 VLFNACMRWVLVCWPV 390
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 84 HYHISATT*SVLPTS*TKPTRS 149
H+H S+++ +V PTS T PT S
Sbjct: 122 HHHSSSSSYAVSPTSPTSPTSS 143
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 31 PNYPNPSQYEIMVMLPNGTITYQPRPDPFYQPHKPNQPDHHITPNR 168
P P + V LP+ + +QP P P PN P + PNR
Sbjct: 156 PPVPQVPSHWYPVSLPSPNLPHQPISKP---PVIPNLPKLQVHPNR 198
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 111 SVLPTS*TKPTRSSHNPQPHQRSVLGPR 194
S++P KPT+ H P + +L PR
Sbjct: 997 SIIPIKPNKPTKPDHLVAPRVKPLLPPR 1024
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 105 SWLICDSAVW*HYHNFILRWV 43
+WL DS W ILRWV
Sbjct: 298 NWLQIDSKQWDQIRGVILRWV 318
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 333 GLAPSIGKIHRISGIADTLIAFRANSIDARFRTFRETLCVLSV 205
GL I ISGI L A N++ + +FRE C +++
Sbjct: 31 GLETKYSIISIISGIFIGLTAALLNALASLLNSFREGYCTVNI 73
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 255 WSLHGRQSMCLQSRIFYGSYR*KVQAPLCRWMS 353
W LH ++ L +F G YR + P+C +S
Sbjct: 448 WRLHKLRNDSLIVDLFQGMYRSTLVCPVCNTVS 480
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Frame = +1
Query: 226 FPECSEPCI-NGVCTEGNQCVCNPGY 300
FP C N +C N C PGY
Sbjct: 364 FPSLCRTCPPNAICPSPNYVECKPGY 389
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 352 PNGLCSGPNLCICNMGY 402
PN +C PN C GY
Sbjct: 373 PNAICPSPNYVECKPGY 389
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 218 HNVSLNVLNRASMEFARKAINVSAIPDILWILPI 319
HNV + + +++ + A K ++ +I DIL +P+
Sbjct: 984 HNVDVQLTSKSLISLAEKRLDSFSINDILSQVPV 1017
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,945
Number of Sequences: 5004
Number of extensions: 53920
Number of successful extensions: 176
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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