Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P07
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.28 
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   0.49 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   2.0  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    27   2.0  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   4.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   6.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   6.1  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   8.0  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 130 FTKYARHWTGLCKCSCAFENIFMAELKSDTVLGLHSW 240
           F  + R W      +  F +IFM + + D V G++SW
Sbjct: 397 FLLFVRGWLSPLGINRIFGSIFMGKTRQDRVYGMYSW 433


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 143 LVTGLAFANVVAPSKIYLWPNLSLILCLVYTAGCSSQSVNWIAKLTTWVI 292
           LV  L  A  V PS +  W  L + LC     G S+++ N I  +  WV+
Sbjct: 412 LVLHLTQAFHVCPS-VTFWKTLFMSLCTAILEGVSTENDNLILPMYMWVL 460


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 54  HKGTNRSGGEYSVDVRCL 1
           H GT+ SGG Y+VDV+ L
Sbjct: 444 HHGTSASGGHYTVDVQQL 461


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 228 TKHSIR-LKFGHKYIFEGATTFAKASPVTSVFCEP---NFLQQLDLFIVLIHLSQPFTN 64
           T H+++ L FG    F GAT   +  PV+    +P   + +   D+ ++LI    P  N
Sbjct: 176 TPHNVKILAFGFVNSFSGATDTVRVLPVSQFSLQPWWNDMVSNKDIDLILIPAHVPVHN 234


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 94  YNEQVQLLQKIWFTKYARHWTGLCKCSCAFENIFMAELKSDTVLGLHSWLFFAKRE 261
           ++ QV L+ KI F+K               E+  M  + SDTV  LH++L  A ++
Sbjct: 180 HSVQVDLIPKINFSKSLMQLEKTNPLPPVDESFLMGSISSDTVDTLHTYLIKALQD 235


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 305 SNLSI*PK*LALRSNSRFAKNNQLCRPSTVSDLSSAI 195
           S L I  K L + SNS  AKN  +  P  ++++ S+I
Sbjct: 80  SKLGIEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSI 116


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 205  LKSDTVLGLHSWLFFAKRELDRKANYLGHIDKLELSGKGM--ILKQHSILSDTK-DAPEV 375
            +K+D  LGLH  +F  + + D+++ Y+     L   G+ +  ++++H  L   K D P  
Sbjct: 1155 IKNDPDLGLHDKIFLDEAKNDKESRYVPSAVHLVRRGEYLLSVVREHPDLFVVKTDQPTK 1214

Query: 376  NMFVGTSP 399
              +   +P
Sbjct: 1215 RKYNRKAP 1222


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 136 KYARHWTGLCKCSCAFENIFMAELKSDTVLGLHSW 240
           KY ++W   CK +  F    M +LKS   L +  W
Sbjct: 466 KYRKYWPDFCKAAGVF---CMGDLKSSDSLKVCDW 497


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 273 FAIQFTLCEEQPAV*TKHSIRLKFGHKYIFEGATTFAKASPVTSVF 136
           F  + T    QP V    S  LKF  KY+ + +    K  PV+S+F
Sbjct: 43  FYAKLTFSHHQPTVSGTMSTELKFISKYL-QISIPETKEGPVSSLF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,668
Number of Sequences: 5004
Number of extensions: 51416
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)