Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P07
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    60   1e-09
12_01_0862 + 8161117-8163913,8164000-8164019                           29   2.0  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     29   3.5  
04_03_0774 - 19457218-19457517,19457575-19457673,19457679-194577...    27   8.2  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
 Frame = +1

Query: 1   QTTYINTILATGPIRTLMNFLVSKGLTQMNEYNEQVQLLQKIWFTKYARHWTGLCKCSCA 180
           +  +I  I  T PI+ L  +LV KG+    +Y +  ++L  +WF  Y R   G    S A
Sbjct: 302 EVAFIEEIARTAPIKYLHRYLVLKGVAS-QDYEDFKRMLTSLWFDLYGR--GGSSSSSSA 358

Query: 181 FENIFMAELKSDTVLGLHSWLFFAKRELDRKANYLGHI--------DKLELSGKGMILKQ 336
           FE++F+ E+K     G +    F   E +   +Y G+I           E     +  + 
Sbjct: 359 FEHVFVGEIKGRRGQGENE---FYLEEANGNVDYQGYIFPRRRGESPDSETQLLTIQFEW 415

Query: 337 HSILSDTKDAPEVNMFVGTSPELETALYTLCF 432
           H +L         +  +G SPE E ALYTLCF
Sbjct: 416 HGVLKSVS-----STLIGVSPEFEVALYTLCF 442


>12_01_0862 + 8161117-8163913,8164000-8164019
          Length = 938

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
 Frame = +1

Query: 1    QTTYINTILATGPIRTLMNFLVSKGLTQMNEYNEQVQLLQKIWFTKYARHWTGLCKCSCA 180
            + T  N+ L+  P+ +L NF     L   N Y  +  L Q  WF K   H   L +    
Sbjct: 789  ELTLENSRLSIDPLPSLSNFCNLTLLGLFNHYIGETLLFQAEWFPKL--HTLTLAE---- 842

Query: 181  FENIFMAELKSDTVLGLHSWLFFA---KRELDRKANYLGHIDKLELSGKGMILKQH 339
             +N+    ++  ++  L+++         +L     +LG +++L L G      +H
Sbjct: 843  LQNVSSIVIEKHSMPNLYNFALICLTNLEDLPEGMEFLGSVEELSLVGMHQKFMEH 898


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 100 EQVQLLQKIWFTKYARHWTGLCKCSCAFENIFMAE 204
           E++  L  IW  K+  H TGLC      +N F+ E
Sbjct: 392 ERIYPLLMIWPPKFPAHLTGLCTLVYLVDNQFLLE 426


>04_03_0774 -
           19457218-19457517,19457575-19457673,19457679-19457726,
           19458382-19458482,19458807-19458918,19459132-19459515,
           19459952-19460128
          Length = 406

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 76  LTQMNEYNEQVQLLQKIWFTKYARHWTGLCKC-SCAFENIFMAELKSD 216
           ++Q  ++  ++ LL   WF  + + WT L    S A+  +   +LKSD
Sbjct: 216 ISQKEDFFYRIFLLYADWFRLWEKWWTALSHIRSSAYHVLCTQDLKSD 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,720
Number of Sequences: 37544
Number of extensions: 307243
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)