Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P07
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR ...    29   3.0  
At5g18410.2 68418.m02167 expressed protein similar to p53 induci...    27   6.8  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    27   6.8  

>At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 848

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
 Frame = +1

Query: 43  RTLMNFLVSKGLTQMNEYNEQVQLLQKIWFTKYARHWTGLCKCSCAFENIFMAELKSDTV 222
           R ++N +   GL Q+   +  +  ++  W +K  R        S  F+     +L S TV
Sbjct: 694 RVILNSVALGGLQQLGIVSCNISEIEIDWLSKERRDHRSTS--SPGFK-----QLASITV 746

Query: 223 LGLH-----SWLFFAKRELDRKANYLGHIDKLELSGKGM-ILKQH 339
           +GL      SWL FA+   D +  Y   I+++    KGM I K H
Sbjct: 747 IGLVGPRDLSWLLFAQNLKDIQVQYSPTIEEIINKQKGMSITKVH 791


>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1017

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 340 SILSDTKDAPEVNMFVGTSPELETALYTL--CFMARPDRPCKLRYNNIAFTIQT 495
           S+  DTK   ++N  +    E+ + LYT   C  A P  P  ++++     ++T
Sbjct: 53  SLSEDTKALNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLET 106


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 340 SILSDTKDAPEVNMFVGTSPELETALYTL--CFMARPDRPCKLRYNNIAFTIQT 495
           S+  DTK   ++N  +    E+ + LYT   C  A P  P  ++++     ++T
Sbjct: 53  SLSEDTKALNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLET 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,632,880
Number of Sequences: 28952
Number of extensions: 255431
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)