Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P06
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   2.4  
10_04_0013 + 7560286-7560594                                           27   5.6  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    27   5.6  
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489...    27   5.6  
10_08_0884 - 21283761-21283877,21283965-21284016,21284119-212841...    27   7.3  
09_02_0462 + 9583558-9584910                                           26   9.7  
09_02_0338 + 7426999-7428322,7428390-7428646                           26   9.7  
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500...    26   9.7  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 210 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY 353
           G  +NV  SPL + + + L  +GAG  +R ++   LG    +E  + +
Sbjct: 32  GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79


>10_04_0013 + 7560286-7560594
          Length = 102

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 348 DWWPHYNLHHPKT-CRSPHDYLHRRLIC 268
           DWW  Y +  P     SPHD   R +IC
Sbjct: 64  DWWS-YGMEFPSAVAASPHDAATRDMIC 90


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 60  VNMIKLYLFA-VIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSS 236
           + +I+L+  A V+ +C +R F+FF      T  G          +K+    G D N  SS
Sbjct: 50  LGLIQLWGSADVLNICKMRRFFFFGSSTASTGNGGKTPSDDDSRIKKKALDGGDSNGSSS 109


>05_07_0247 +
           28643862-28644310,28645151-28645207,28645644-28648950,
           28649069-28649144,28649356-28649426,28649524-28649589,
           28649677-28649766,28649874-28650050,28650513-28650548
          Length = 1442

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 282 GEGSRVEIDKFLGDVDYSEATNPYISLSK 368
           GE  + + D  +G+ D  E TNP   LSK
Sbjct: 540 GEDQKQKTDAAVGEEDKCEVTNPVTKLSK 568


>10_08_0884 -
           21283761-21283877,21283965-21284016,21284119-21284187,
           21284475-21284587,21284694-21284753,21284834-21285136
          Length = 237

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 138 YNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDK 311
           Y +   G  ID     + +    S +D  V S     MM++  Y S +G+G+++ + K
Sbjct: 164 YLQDEYGTTIDALEFMISRGVKRSARD--VKSDAYSAMMILERYFSSSGQGAKIVLPK 219


>09_02_0462 + 9583558-9584910
          Length = 450

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 135 EYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLG 245
           E  R   G+A D+   KL KEA   G  K   SS  G
Sbjct: 164 EKERLKEGEAADEEMKKLKKEAKKKGASKESTSSKSG 200


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 297 HDYLHRRLICREALASSRLMVKTQHSC 217
           H+YLH+     E + +SRLMV+   +C
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNC 405


>03_05_0248 +
           22348504-22348568,22349064-22349371,22349476-22350039,
           22350082-22350128,22351244-22351715,22352349-22352611
          Length = 572

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 279 AGEGSRVEIDKFLGDVDYSEATNPYISLSKTFS---EMNPDFFT 401
           A  G RVE    LGD DY ++T  +++++   +   +M+P  FT
Sbjct: 261 AASGGRVEFMGKLGDDDYGQSTLYHLNVNGVQTRAIKMDPSAFT 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,584,988
Number of Sequences: 37544
Number of extensions: 205586
Number of successful extensions: 505
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)