Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_P06
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein... 28 2.0
At4g13330.1 68417.m02083 expressed protein 27 4.7
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 27 4.7
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 4.7
At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4 fa... 26 8.2
At4g00880.1 68417.m00119 auxin-responsive family protein similar... 26 8.2
At2g29300.1 68415.m03559 tropinone reductase, putative / tropine... 26 8.2
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 26 8.2
At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger) fa... 26 8.2
At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger) fa... 26 8.2
At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger) fa... 26 8.2
At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger) fa... 26 8.2
At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger) fa... 26 8.2
>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 377
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 117 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 290
+YFF H+ + G ++ +M +A +G+DK V S +G+ ++ YK A G
Sbjct: 69 WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126
Query: 291 SRVE 302
+ +
Sbjct: 127 QKTD 130
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 171 YQWRHLRLSCCTRGQRNRMLARCR 100
YQWR LR + TR +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 255 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMN 386
L L YK GAGE + V S +S+ + F+E N
Sbjct: 942 LALFYKDGAGEPHEYTLSSMWDKVGVSSKFEERVSVVREFNESN 985
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 340 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 221
+SL +SP LS+S P P P +S ++P+ +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139
>At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4
family protein contains Pfam profile PF05132: RNA
polymerase III RPC4
Length = 295
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 174 TSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGA 281
T+ + ++E Y+SG P G M ML+YKSGA
Sbjct: 172 TTKRSVRE-YSSGISNPFEGLPEGFMGKMLVYKSGA 206
>At4g00880.1 68417.m00119 auxin-responsive family protein similar to
small auxin up RNA (GI:546362) {Arabidopsis thaliana}
Length = 122
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 317 QKLVDLHTTTFTGA*FVEKH*HHH 246
Q L+D T F G ++ H HHH
Sbjct: 90 QGLIDRENTRFLGTNLLDHHHHHH 113
>At2g29300.1 68415.m03559 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 263
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 5 NLSASVHYCILVVDYARTSQHDQVIFIRGYRGL 103
NL A+ H+C L +TS + ++F+ G+
Sbjct: 118 NLEAAYHFCQLSHPLLKTSGYGSIVFLSSVSGV 150
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 159 DAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFL 317
+ + + + K+++ +G NVV SP+ + +L+ L +G+ ++ EI FL
Sbjct: 12 NVVARLAKKVIETDVANGS--NVVFSPMSINVLLSLIAAGSNPVTKEEILSFL 62
>At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 275
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 354 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 193
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 354 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 193
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 354 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 193
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 354 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 193
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
>At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 354 CTDWWPHYNLHHPKTCRSPHDYLHRRLICREALASSRLMVKTQHSCPSQMYMLP 193
C+D P NL P C Y HR+ + R ++ + H Y P
Sbjct: 46 CSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,844
Number of Sequences: 28952
Number of extensions: 166601
Number of successful extensions: 426
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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