Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P03
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495     30   1.3  
11_01_0446 + 3462820-3464265                                           29   2.9  
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458...    27   8.9  

>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
          Length = 593

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 166 KCFHSICYSNMVVLEGACSGSELGSCMVCF 255
           K    + +SN+V LEG C  SE G C + +
Sbjct: 339 KILQKVNHSNLVKLEGFCINSETGDCYLVY 368


>11_01_0446 + 3462820-3464265
          Length = 481

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 188 IPIWLFWRVHALEVSSALAWFVLVTAAS 271
           +P+WL W +HA    S + W+ + ++A+
Sbjct: 148 VPLWLMWSIHA----SRIVWYYITSSAA 171


>09_06_0067 -
           20645012-20645095,20645365-20645466,20645583-20645828,
           20646042-20646236,20646343-20646636,20646952-20647134,
           20647534-20647593,20647796-20648002,20648081-20648282,
           20648367-20648494,20648759-20648842,20648955-20649134,
           20649281-20649372,20649620-20649789,20650226-20650337,
           20650451-20650554,20651262-20651371
          Length = 850

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 296 GMPVQVTKYSQRSLKQTMQEPSSLPEHAPSRT 201
           GMP  + K++QR L++  +     P ++ SRT
Sbjct: 313 GMPANIWKHAQRELRRLRKMQPQQPGYSSSRT 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,704
Number of Sequences: 37544
Number of extensions: 329274
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)