Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P03
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)              131   4e-31
SB_54329| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.16)              29   3.9  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   5.2  
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)          28   6.9  
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 27   9.1  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score =  131 bits (317), Expect = 4e-31
 Identities = 60/112 (53%), Positives = 81/112 (72%)
 Frame = +2

Query: 83  KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALAWFVLVT 262
           K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++  S+   F ++T
Sbjct: 5   KKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAVMT 64

Query: 263 AASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDER 418
             STWL+A AY+N KFQLKH             ++++L  +KK++R+EKDER
Sbjct: 65  LVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDER 116


>SB_54329| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.16)
          Length = 313

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 133 CVHKIIGSVLWKCFHSICYSNMVVLEGACSGSELGSCMVCFSDRCEYLVTC 285
           C HK   +V   C H  C     V  G  SG+    C + + + C+ +V C
Sbjct: 221 CTHKEELTVGKSCIHVACSVGSTVWLGTESGTLHVYCAITYRELCKGVVKC 271


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 9   RYHCCVSLECV*EYYKNIQCQAKEIKHSRRKKSYCCRILVVMCPQNHRLCFMEMLS 176
           R+H C   + +    +  Q Q   +K    +K+ CC    +  P  HR CF ++++
Sbjct: 222 RFHKCCHNQVIPILEQCQQMQVCGMKPYDMEKNACCNNKHIYNPDTHRCCFGKLIA 277


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 423 FGKRMKWLIMKLQHMPFFIIMP-CSL-PLSYWAASTF 527
           F KR+ W+ M   H+ F++ MP C +     W  +TF
Sbjct: 417 FSKRIVWIFMLPVHLAFYVTMPDCRVKKWEAWYPATF 453


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 9   RYHCCVSLECV*EYYKNIQCQAKEIKHSRRKKSYCCRILVVMCPQNHRLCFMEMLS 176
           R+H C   + +    +  Q Q   +K    +K+ CC    +  P  HR CF ++++
Sbjct: 222 RFHKCCHNQVIPILEQCQQMQVCGMKPYDMEKNACCNNKHIYNPDTHRCCFGKLIA 277


>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = -3

Query: 360 SRATASSLRTATRCFS*NLVLRYASASNQVLAAVTKTNHARAELTSRACTLQNNHIGIAD 181
           +  T  +LR A   ++ N+ +R    ++ +     +  HAR      ACT+Q+ H G   
Sbjct: 230 THGTTRTLRYAG--YNRNIAVRTVQHAHHITTPTVQ--HARYNTHITACTVQHEHCGTHG 285

Query: 180 TMKAFP*NRADDFVDT 133
           T + F   R +  + T
Sbjct: 286 TTRTFRHARYNTHITT 301


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 133 CVHKIIGSVLWKCFHSICYSNMVVLEGA-CSGSELGSCMVCFSDRC 267
           C +   G V WK     C +      GA C GS  G C VC S +C
Sbjct: 376 CSYTCGGGVQWKT--RTCTNPKPARGGADCVGSSRGHCRVCNSVQC 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,638
Number of Sequences: 59808
Number of extensions: 396698
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)