Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P02
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    31   0.20 
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.35 
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    28   1.4  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    27   1.9  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   3.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.5  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.9  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    25   9.9  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   9.9  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   9.9  

>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 YYLHDYSLNAHYYYHHLT 171
           +Y   YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 361 YDTCIQNCSLRLRRYH*VHRFHQIH*KVFPYSNV 260
           YD+ I N S   RRY  V +  QI  K FPY N+
Sbjct: 59  YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNI 92


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 153 LLSSSDLQQVARRRCSSSIKRETWRMVLVRTQTTCNTLLYGK 278
           L+    LQ  AR  C S  +   W+ ++ +   T   LLY K
Sbjct: 594 LVQRGSLQDRARIYCLSDDELSKWKTIIYKENLTAENLLYPK 635


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 69  VEYYCLALPLPKRFYVLLLT*LQFKCPLLLSSS----DLQQVARRRCSSSIKR 215
           V Y C    + K +Y  +L   + +CP++++S     D++ VA    S+ IKR
Sbjct: 124 VVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKR 176


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +1

Query: 307  ELSGNVVNEGYNFGYMYHNGIPYPVRPNHFHLDH-PEYLGE--LEKIKDYERRLRDGIEN 477
            +LSGN +    NF  + H  + Y       ++D+   Y+ +  LE + DYE+R++   E 
Sbjct: 973  KLSGNPIISTPNF--LTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQEL 1030

Query: 478  GYI 486
            GYI
Sbjct: 1031 GYI 1033


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 420 QILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDVTTKF 307
           Q+ W + V+M+  NW  Y   + ++  + F+ D  T +
Sbjct: 709 QVYWRLGVQMVALNWQTYDTGLQINDAL-FIADPPTGY 745


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 196 HRLLATCCKSDDDNNSGHLNCNHV 125
           H L+    K+DDD ++ HL  +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 438 YFFKFTQILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDV 319
           Y F   + L  + V+ +R N  W T    +S ++A  +DV
Sbjct: 337 YTFAMLEQLLELSVKTLRQNTCWSTSWEMLSSLLAIDFDV 376


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 273 HIVTCYKLFVYEPVP 229
           H+++CYK   +EP P
Sbjct: 594 HVLSCYKTLFFEPPP 608


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 330 VYDVTTKFTDFTKSIRKSFHIVTCYKLFVY 241
           ++D TT F D +   ++SF  + C+ +F +
Sbjct: 92  MHDSTTIFKDVSSRQKRSFFKLACFAVFFF 121


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 532 IDILGRLIEAGVASPNVQYYKDFISSWK 615
           I   G  I AG  +  VQY K+ IS WK
Sbjct: 220 ISCYGCNIPAGFIAYGVQYAKNTISPWK 247


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           Q+A + Y  HD +L  H Y H   +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,195
Number of Sequences: 5004
Number of extensions: 61634
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)