Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P02
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        33   0.28 
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28068| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       29   2.6  
SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)           29   4.5  
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)                   28   6.0  
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)                      28   6.0  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   7.9  

>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 502  DHVPIHTPEGIDILGRLIEAGVASPNVQYYKD 597
            D  P+HT EG DI  ++  +G     V++YKD
Sbjct: 1069 DKTPVHTVEGSDITMKVAVSGTPRTEVEWYKD 1100


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 436 IKDYERRLRDGIENGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQYYKDFISSWK 615
           I++  R LR+ I N    N+ G    +   E  DIL  +++  +   ++Q  KD   SW+
Sbjct: 807 IRELNRLLRNEISNAQGPNAAGQKNFLFQ-EVKDILSNVVQRNMVRESLQAKKDAFESWR 865

Query: 616 YVL 624
            V+
Sbjct: 866 QVI 868


>SB_28068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +1

Query: 124 LHDYSLNAHYYYHHLTYNKWL------GGDVVPLLKERRGEWYWFVHKQLVTRYYMERL 282
           L  Y L  H  Y+  + N+         G ++P+ ++    W WF HK+  TR Y++ L
Sbjct: 11  LKKYELTIHEIYNDASSNRQSCSKTKSNGKILPVKRKWTWMWRWFTHKE--TRRYVDML 67


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 58   VVIRSNTTVW-HYHCQSASMSYYLHDYSLNAHYYYHHLTYN 177
            ++I    T++ HYH       +Y H      H+++HH  YN
Sbjct: 1020 IIITIIITIFNHYHHHRRRHHHYHHQQQHQFHHHHHHTHYN 1060


>SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 318 TTKFTDFTKSIRKSFHIVTCYKLFVYEPVPF 226
           TTK  + TK   K FH + C++    EP+ F
Sbjct: 196 TTKSEEITKQFEKVFHGIGCFQDKTGEPIEF 226


>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
          Length = 299

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 91  YHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPL 207
           Y C  A +  YL ++S    +Y   +T++    GD+VPL
Sbjct: 138 YLCLMAGLGMYLEEWSFLDSFYAWFITFSTIGFGDLVPL 176


>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
          Length = 327

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
 Frame = +1

Query: 304 GELSGNVVNEGYNFGY--MYHN---GIPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDG 468
           G  S  +  +  N G+  ++ N   G  + VR    H+++ E L     +K Y + LRD 
Sbjct: 56  GAPSHTLTTDASNLGWGAVFENDSTGGTWSVREQKHHINYLELLAVFLGLKTYCKDLRDA 115

Query: 469 IENGYIINSTG----DHV-PIHTPEGIDILGRLI 555
                I N+T     +H+   H+PE +++LG+ I
Sbjct: 116 HVRAMIDNTTAIAVLNHMGTSHSPE-LNLLGKTI 148


>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 585 LNIRRSNTGFDKTAKNIDALRSMNGNMITSAVNDITIF 472
           L++   NTG  KTA+++   RS  G    S V D ++F
Sbjct: 242 LSLAAPNTGMSKTARSVRIQRSARGWSRLSVVPDESVF 279


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +1

Query: 193  DVVPLLKERRGEWYWFVHKQLVTRYYMERLSNGF-----GEIGELSGNVVNEGYN----F 345
            D  P  + + G  +W V+K+L  RY + R +N F     G I   +   V   Y+    F
Sbjct: 3241 DYNPSSRNKWGVHFWIVNKRLFVRYTV-RKTNDFTAALMGRIKSNTWEYVGTSYDWNTGF 3299

Query: 346  GYMYHNG 366
             Y++ NG
Sbjct: 3300 AYLFRNG 3306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,887,861
Number of Sequences: 59808
Number of extensions: 452316
Number of successful extensions: 1483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)