Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_P02
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK000635-1|BAA91300.1|  477|Homo sapiens protein ( Homo sapiens ...    31   2.8  
U54999-1|AAB40385.1|  677|Homo sapiens LGN protein protein.            30   6.6  
CR456786-1|CAG33067.1|  677|Homo sapiens GPSM2 protein.                30   6.6  
BC027732-1|AAH27732.1|  677|Homo sapiens G-protein signaling mod...    30   6.6  
AY136740-1|AAN01266.1|  677|Homo sapiens LGN protein protein.          30   6.6  
AL449266-9|CAI14361.1|  684|Homo sapiens G-protein signalling mo...    30   6.6  
AL449266-8|CAI14360.1|  213|Homo sapiens G-protein signalling mo...    30   6.6  
Y17739-1|CAB50769.1|  368|Homo sapiens hepatocyte nuclear factor...    30   8.7  
U96173-1|AAD00826.1|  465|Homo sapiens hepatocyte nuclear factor...    30   8.7  
AF035581-1|AAD02033.1|  465|Homo sapiens hepatocyte nuclear fact...    30   8.7  

>AK000635-1|BAA91300.1|  477|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20628 fis, clone KAT03903. ).
          Length = 477

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +1

Query: 196 VVPLLKERRGEWYWFVHKQLVTRYYMERLSNGFGEIGELSGNVVNEGYNFGYMYHNGIPY 375
           +V L K++ G     V  ++ T   ++      G  GEL     +E  +F + Y    PY
Sbjct: 394 LVCLAKQKNGILAQKVESKINTDVQLDSQEK-IGVKGELFQEDDHEESHFDFPY-GSFPY 451

Query: 376 PVRPNHFHLDHPEYLGELEKIK 441
             RP H+   H  +L +L K+K
Sbjct: 452 VARPVHWQPGHTAFLVKLRKVK 473


>U54999-1|AAB40385.1|  677|Homo sapiens LGN protein protein.
          Length = 677

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           + Q  +  +YLHDY+    Y++H LT  + +G
Sbjct: 58  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 89


>CR456786-1|CAG33067.1|  677|Homo sapiens GPSM2 protein.
          Length = 677

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           + Q  +  +YLHDY+    Y++H LT  + +G
Sbjct: 58  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 89


>BC027732-1|AAH27732.1|  677|Homo sapiens G-protein signaling
           modulator 2 (AGS3-like, C. elegans) protein.
          Length = 677

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           + Q  +  +YLHDY+    Y++H LT  + +G
Sbjct: 58  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 89


>AY136740-1|AAN01266.1|  677|Homo sapiens LGN protein protein.
          Length = 677

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           + Q  +  +YLHDY+    Y++H LT  + +G
Sbjct: 58  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 89


>AL449266-9|CAI14361.1|  684|Homo sapiens G-protein signalling
           modulator 2 (AGS3-like, C. elegans) protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           + Q  +  +YLHDY+    Y++H LT  + +G
Sbjct: 65  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 96


>AL449266-8|CAI14360.1|  213|Homo sapiens G-protein signalling
           modulator 2 (AGS3-like, C. elegans) protein.
          Length = 213

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLG 189
           + Q  +  +YLHDY+    Y++H LT  + +G
Sbjct: 65  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 96


>Y17739-1|CAB50769.1|  368|Homo sapiens hepatocyte nuclear factor 6
           protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
 Frame = +1

Query: 148 HYYYHHLTYNKWLGGDVVPLLKERRGEWYWFVHKQLVTRYYMERLSNGFGEIGELS---- 315
           H+++HH  +++ L G+V       R E        L T Y+ +    G   +  LS    
Sbjct: 129 HHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNLYTPYHKDVAGMG-QSLSPLSSSGL 187

Query: 316 GNVVNEGYNFGYMYHNGIPYP----VRPNHFHLDHPEYLG 423
           G++ N      +  H G   P    + PN F   HP  LG
Sbjct: 188 GSIHNSQQGLPHYAHPGAAMPTDKMLTPNGFETHHPAMLG 227


>U96173-1|AAD00826.1|  465|Homo sapiens hepatocyte nuclear factor-6
           alpha protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
 Frame = +1

Query: 148 HYYYHHLTYNKWLGGDVVPLLKERRGEWYWFVHKQLVTRYYMERLSNGFGEIGELS---- 315
           H+++HH  +++ L G+V       R E        L T Y+ +    G   +  LS    
Sbjct: 129 HHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNLYTPYHKDVAGMG-QSLSPLSSSGL 187

Query: 316 GNVVNEGYNFGYMYHNGIPYP----VRPNHFHLDHPEYLG 423
           G++ N      +  H G   P    + PN F   HP  LG
Sbjct: 188 GSIHNSQQGLPHYAHPGAAMPTDKMLTPNGFEAHHPAMLG 227


>AF035581-1|AAD02033.1|  465|Homo sapiens hepatocyte nuclear factor
           6 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
 Frame = +1

Query: 148 HYYYHHLTYNKWLGGDVVPLLKERRGEWYWFVHKQLVTRYYMERLSNGFGEIGELS---- 315
           H+++HH  +++ L G+V       R E        L T Y+ +    G   +  LS    
Sbjct: 129 HHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNLYTPYHKDVAGMG-QSLSPLSSSGL 187

Query: 316 GNVVNEGYNFGYMYHNGIPYP----VRPNHFHLDHPEYLG 423
           G++ N      +  H G   P    + PN F   HP  LG
Sbjct: 188 GSIHNSQQGLPHYAHPGAAMPTDKMLTPNGFEAHHPAMLG 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,664,343
Number of Sequences: 237096
Number of extensions: 2008191
Number of successful extensions: 7921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7917
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)