BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0005_O23 (474 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 244 3e-65 AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 3.0 Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 27 6.9 AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 27 6.9 AC199160-2|ABO33282.1| 222|Caenorhabditis elegans Hypothetical ... 27 6.9 U23452-1|AAK31545.2| 284|Caenorhabditis elegans Hypothetical pr... 27 9.1 >U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal protein, large subunitprotein 23 protein. Length = 140 Score = 244 bits (596), Expect = 3e-65 Identities = 113/131 (86%), Positives = 123/131 (93%) Frame = +2 Query: 8 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 187 MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60 Query: 188 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 367 V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120 Query: 368 VAKECADLWPR 400 VAKECADLWPR Sbjct: 121 VAKECADLWPR 131 >AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical protein Y66D12A.5 protein. Length = 729 Score = 28.3 bits (60), Expect = 3.0 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Frame = +2 Query: 59 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 226 L L G V C +D KN + + G + G+LNR M+ +T K +L Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512 Query: 227 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 310 V P +RK +RD F Y+ED+ Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541 >Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical protein F58B3.5 protein. Length = 917 Score = 27.1 bits (57), Expect = 6.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +2 Query: 5 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 124 K K+G+GG+A A I +G + VG +I C + A LYV Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781 >AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical protein F53H1.4a protein. Length = 1370 Score = 27.1 bits (57), Expect = 6.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 330 TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 422 TRGR A+ + ++R L + VLR TPAP Sbjct: 1217 TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 1246 >AC199160-2|ABO33282.1| 222|Caenorhabditis elegans Hypothetical protein CE7X_3.2 protein. Length = 222 Score = 27.1 bits (57), Expect = 6.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 330 TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 422 TRGR A+ + ++R L + VLR TPAP Sbjct: 90 TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 119 >U23452-1|AAK31545.2| 284|Caenorhabditis elegans Hypothetical protein R07G3.5 protein. Length = 284 Score = 26.6 bits (56), Expect = 9.1 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 262 PLPDHHCWHYLFPEFW 215 P+PDH W L PEF+ Sbjct: 178 PVPDHKTWRPLDPEFY 193 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,652,164 Number of Sequences: 27780 Number of extensions: 264843 Number of successful extensions: 782 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 782 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 860942358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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