Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O22
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    40   2e-04
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    29   0.37 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   6.1  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   8.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.0  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +3

Query: 6    GRHIAMMPHPERCTMRWQCPTDAPKPLVSSDPTCQYSPWLRLFQNAYLW 152
            GR +AMMPHPER  ++     ++  P   +     + PW+RLFQ+A  W
Sbjct: 1276 GRFLAMMPHPERVVLK---VANSYYPHSKASEWGVHGPWIRLFQSARKW 1321


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 157 EAQRYAFWKSRSQGEYWQVGSEETRGFGASVGHCQRIVQR 38
           +A +   W+ +S GE    G    +  G+SV  CQR++++
Sbjct: 72  DASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEK 111


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 121 GFDSSKTHISGLRTIKIIPYNKLILFRFIKSKL 219
           G DSS T  +G R  K+    K+ILF FI   L
Sbjct: 398 GNDSSATTSAGSRYFKVRYGTKIILFIFIAFNL 430


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 37  SVALCVGNAPRMHRNPSFPPTPLANIPLGFDSS 135
           S  L  GN+       SF PTP ++ PL F +S
Sbjct: 197 SSTLSHGNSVEADEINSFNPTPFSSSPLHFTNS 229


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 212 DLMKRNNMSLL*GIILMVRSPEICVLEESKPRGILASGVGGNEGFRCIRGA 60
           DL K    +LL G +L   + + C+ E+     +  S  GG E  +C+R A
Sbjct: 553 DLEKNITEALLTGDVLS--AVKACLEEKKISEALFLSTFGGKECRKCVRDA 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,857
Number of Sequences: 5004
Number of extensions: 51928
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)