Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O22
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1608 - 38612754-38616947,38617030-38617095                       62   2e-10
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    60   9e-10
02_01_0441 - 3191522-3191887,3193787-3193957                           28   6.2  
01_03_0294 - 14745886-14745944,14745981-14746036,14746401-147464...    28   6.2  

>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 30/50 (60%), Positives = 32/50 (64%)
 Frame = +3

Query: 3    DGRHIAMMPHPERCTMRWQCPTDAPKPLVSSDPTCQYSPWLRLFQNAYLW 152
            DGRH+AMMPHPERC M WQ P   PK        C  SPWLR+FQNA  W
Sbjct: 1371 DGRHLAMMPHPERCFMMWQYPW-YPKEWQLE--KCGPSPWLRMFQNAREW 1417


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 31/49 (63%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
 Frame = +3

Query: 3    DGRHIAMMPHPERCTMRWQCPTDAPK--PLVSSDPTCQYSPWLRLFQNA 143
            DGRH+AMMPHPERC M WQ P  +PK   L  S P    SPWLR+FQNA
Sbjct: 1367 DGRHLAMMPHPERCFMMWQYPW-SPKDWQLEKSGP----SPWLRMFQNA 1410


>02_01_0441 - 3191522-3191887,3193787-3193957
          Length = 178

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 170 ILMVRSPEICVLEESKPRGILASGVGGNEGFRCIR 66
           ++M+ S E+C+L ES  + I+         F C++
Sbjct: 123 VMMLDSDEVCILAESGRKQIILDAFADGSSFICLK 157


>01_03_0294 -
           14745886-14745944,14745981-14746036,14746401-14746452,
           14746922-14747303
          Length = 182

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 51  RWQCPTDAPKPLVSSDPTCQYSP 119
           RW CP DA +P V + P   + P
Sbjct: 105 RWFCPVDAGRPAVDNAPLLLFLP 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,938
Number of Sequences: 37544
Number of extensions: 309067
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)