Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O22
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74260.1 68414.m08600 AIR synthase-related family protein con...    56   1e-08
At5g03555.1 68418.m00313 permease, cytosine/purines, uracil, thi...    33   0.18 
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    31   0.56 
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    31   0.56 
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,...    31   0.73 
At1g77910.1 68414.m09079 hypothetical protein contains similarit...    29   1.7  
At1g54200.1 68414.m06178 expressed protein                             29   2.2  
At5g05030.1 68418.m00534 expressed protein contains similarity t...    28   5.2  
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro...    27   9.0  

>At1g74260.1 68414.m08600 AIR synthase-related family protein contains
            Pfam profiles: PF00586 AIR synthase related protein,
            N-terminal domain, PF02769 AIR synthase related protein,
            C-terminal domain
          Length = 1387

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/50 (52%), Positives = 30/50 (60%)
 Frame = +3

Query: 3    DGRHIAMMPHPERCTMRWQCPTDAPKPLVSSDPTCQYSPWLRLFQNAYLW 152
            DGRH+AMMPHPERC + WQ P     P          SPWL++FQNA  W
Sbjct: 1337 DGRHLAMMPHPERCFLMWQFPW---YPTSWDVEKAGPSPWLKMFQNARDW 1383


>At5g03555.1 68418.m00313 permease, cytosine/purines, uracil,
           thiamine, allantoin family protein contains Pfam
           PF02133: permease, cytosine/purines, uracil, thiamine,
           allantoin family
          Length = 599

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/74 (28%), Positives = 40/74 (54%)
 Frame = +3

Query: 327 LMLHINKIGYKYS*RSLKPKLKSDYQ*GIYEHFNFILEESAVY*SMTSCIKRFVLRERDR 506
           L LH+N   +K++  SL   L+S  +  +Y+H +F   +S+   S TSC+  F ++ +  
Sbjct: 8   LSLHLNLHPHKHNRHSLS-SLRSRTKAKLYQHVSFT--DSSHKSSYTSCVSTFDIQRKSS 64

Query: 507 TSLDSHQHL*TPII 548
              +  +H  +PI+
Sbjct: 65  KHYELGKHSFSPIL 78


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 13  ISP*CHIPSVALCVGNAP--RMHRNPSFPPTPLANIPL-GFDS 132
           I P C +P    C    P      NP+FPP P  N P  GFDS
Sbjct: 29  ICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDS 71


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 13  ISP*CHIPSVALCVGNAP--RMHRNPSFPPTPLANIPL-GFDS 132
           I P C +P    C    P      NP+FPP P  N P  GFDS
Sbjct: 29  ICPICTVPHFPFCPPYPPPSSFAYNPNFPPPPHLNSPRPGFDS 71


>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 793

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 85  SFPPTPLANIPLGFDSSKTHISGLRTIKIIPYNKLILFRFI 207
           SFPP PL  + +   S    I+ L ++K +  NK+IL + I
Sbjct: 665 SFPPLPLVVLKISEGSDPPAIAALGSLKSVEPNKIILKKII 705


>At1g77910.1 68414.m09079 hypothetical protein contains similarity
           to NADH dehydrogenase subunit 1
          Length = 89

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 243 QYIYQFVSPLRMVFVIYLLCLQIFIEYFL-MLH 338
           +YI+ ++ PL + F+I+LLC  I+ EY L +LH
Sbjct: 49  KYIFIYMPPL-IDFLIFLLCFVIYGEYLLCILH 80


>At1g54200.1 68414.m06178 expressed protein
          Length = 366

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 67  RMHRNPSFPPTPLANIPLGFDSSKTHISGLRTIK 168
           R HR+PSF  T L  I    D S T+ S +R  K
Sbjct: 21  RDHRHPSFSSTLLDQIYRSIDDSSTNSSSMRKTK 54


>At5g05030.1 68418.m00534 expressed protein contains similarity to
           carboxyl-terminal proteinase contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 363

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 115 PLGFDSSKTHISGLRTIKIIPYNKLI 192
           PL  DS  THI+G+RT    PY  +I
Sbjct: 111 PLTIDSHGTHIAGVRTTDQGPYRGVI 136


>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain;  identical to SAC domain protein 2
           (SAC2) GI:31415720
          Length = 808

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 267 EKRIDKCIDLQLIFYTQFRFDETK*YELVIGDYFNGSKPRDMRFGRVE-AKGNI 109
           E+ IDK +D+   F  +FR  ET+    +IG   N +  R ++  R E A+ NI
Sbjct: 5   ERSIDKEVDMGSSFLQKFRLYETRSSFYMIGRDKNRTSWRVLKLDRTEPAEVNI 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,641
Number of Sequences: 28952
Number of extensions: 257390
Number of successful extensions: 642
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)