Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O21
(250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 27 0.48
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 0.84
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 0.84
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 1.1
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 25 1.1
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 1.5
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 24 3.4
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 23 5.9
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 23 5.9
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 23 7.8
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 0.48
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 29 FHLSNIKMFLKLFIFITGLGLASTEGPKPVVKVSHG 136
F S + L LFI + GLG E P + + +G
Sbjct: 27 FSFSFVNALLALFIIVFGLGTIGLEKEIPPIAIKYG 62
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 0.84
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 80 GLGLASTEGPKPVVKVSHGVLQGAWKV 160
GL AS + KP++ VS+ ++ W V
Sbjct: 428 GLENASYDATKPIIPVSYTIIDKVWDV 454
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 0.84
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -1
Query: 229 YSPMGGCAXWYTLKTGIGPALCGDFPRALQHTMTDLDDRFRTFGRS*TEPGNKYK*F*E- 53
Y + GC + + L G L+HT +DL DRF+ N K F E
Sbjct: 51 YFRITGCLINFGKQPANDHHLWGHCGARLKHTQSDLIDRFKNANLKSVNEENLKKFFSEL 110
Query: 52 --HFNIRK-MKSSME 17
H NIR+ +K E
Sbjct: 111 ENHGNIRQWLKDKFE 125
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 91 SFDRRSETCRQGQSWCAARRVESLHKGQDL 180
S +R S C+Q W R ESL K Q L
Sbjct: 677 SEERASPDCQQAIEWFRQRYSESLEKSQFL 706
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 1.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 204 YAQPPIGEYRFREP 245
YA+PP+G+ R+R P
Sbjct: 26 YAKPPVGKLRWRRP 39
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.0 bits (52), Expect = 1.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -3
Query: 218 GRLRVXVHPENWHRSCPLWR 159
G+L + PE W + P W+
Sbjct: 7 GKLHIYASPEQWEKWSPRWK 26
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 23.8 bits (49), Expect = 3.4
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +1
Query: 139 AARRVESLHKGQDLCQF 189
AA +VE+L KG++LC++
Sbjct: 372 AASQVETLKKGKNLCKW 388
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.0 bits (47), Expect = 5.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 83 LGLASTEGPKPVVKVSHGVLQGAWKVS 163
+GLA+ E P + H V Q W+++
Sbjct: 283 IGLAAAEVDNPQKALPHAVKQVFWRIA 309
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 23.0 bits (47), Expect = 5.9
Identities = 11/48 (22%), Positives = 19/48 (39%)
Frame = +2
Query: 65 FIFITGLGLASTEGPKPVVKVSHGVLQGAWKVSTKGRTYASFQGVPXR 208
F+ +T + E P P++ VS + G + + G P R
Sbjct: 110 FVLVTTHKFSINESPYPIIAVSQSPIDKTIACGFGGGLVSCYHGNPLR 157
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -3
Query: 239 SKSVFS-NGRLRVXVHPEN 186
+KSV S NGR+RV + P+N
Sbjct: 182 AKSVPSENGRIRVSMSPQN 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,746
Number of Sequences: 5004
Number of extensions: 17957
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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