Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O21
         (250 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.0  
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.3  
SB_56820| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_56595| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_20228| Best HMM Match : DUF640 (HMM E-Value=6.2)                    26   4.1  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   26   5.4  
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)                 25   7.1  
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)                     25   9.4  
SB_19955| Best HMM Match : AFP (HMM E-Value=0.14)                      25   9.4  
SB_4352| Best HMM Match : AFP (HMM E-Value=0.8)                        25   9.4  
SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)                       25   9.4  

>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 189 FRVYXYAQPPIGEYRFREP 245
           FR   YAQPP+G+ RF  P
Sbjct: 64  FRAIPYAQPPVGKLRFAAP 82


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 103 RSETCRQGQSWCAARRVESLH 165
           R     +G+SWC  RR E LH
Sbjct: 924 RRRIVEEGESWCCLRRKEGLH 944


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 204 YAQPPIGEYRFREPQ 248
           YAQ PIG+ RF+ PQ
Sbjct: 122 YAQQPIGDLRFKPPQ 136


>SB_56820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 VFRVYXYAQPPIGEYRFREPQ 248
           +F    YA+ P+GE RF +PQ
Sbjct: 13  IFLEIPYARAPVGELRFADPQ 33


>SB_56595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +3

Query: 105 VRNLSSRSVMVCCKARGKSPQRAGPMP------VFRVYXYAQPPIGEYRFREPQ 248
           V +L+ + V++  + +GK      P+P      +F    YA+ P+GE RF +PQ
Sbjct: 2   VCSLAEQDVVITLE-QGKIQGMREPVPGGYEVEIFLGIPYARAPVGELRFADPQ 54


>SB_20228| Best HMM Match : DUF640 (HMM E-Value=6.2)
          Length = 237

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 196 TLKTGIGPALCGDFPRALQHTMTDLDDRFRTFGR 95
           T++T    A C D  R + HT+    DR RT  R
Sbjct: 158 TVQTSPNSAHCTDLTRQIAHTVQTSPDRQRTLYR 191


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 55  LKTIYIYYRARFSFDRRSETCRQGQSWCAARRVESLH 165
           L+ +++     F  DR  +TC++G  W A +   S++
Sbjct: 260 LQKVHVTEAHPFKIDRVLKTCKRGGRWLARQDSSSMY 296


>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 80  GLGLASTEGPKPVVKVSHGVLQGAWKVSTKGRT 178
           GLGL+ T  P P ++VS           TKG T
Sbjct: 179 GLGLSRTSTPSPELRVSPSPTLKTESTQTKGTT 211


>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 4   CRRAPPSKISSFEY*NVLKTIYIYYRARFSFDRRSETCRQGQSWC 138
           C  +  +++S F      K + ++ R  F F    +TC   +S C
Sbjct: 199 CENSVATRLSRFRVFECAKILSVFVRNAFGFSAMRKTCFATRSSC 243


>SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 569

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 62  LFIFITGLGLASTEGPKPVVKVSHGVLQGAWKV 160
           L IF +G    ST  PKP++   HG + GA  V
Sbjct: 192 LVIFTSG----STGRPKPILYTHHGFVNGALSV 220


>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
          Length = 837

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 151 RALQHTMTDLDDRFRTFGRS 92
           +AL+HT  DL D  R FG+S
Sbjct: 367 KALRHTTHDLLDGLRDFGQS 386


>SB_19955| Best HMM Match : AFP (HMM E-Value=0.14)
          Length = 691

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 166 CGDFPRALQHTMTDLDDRFRTFGR 95
           C DF R + HT+    DR RT  R
Sbjct: 355 CTDFTRLIAHTVQTSPDRQRTLYR 378


>SB_4352| Best HMM Match : AFP (HMM E-Value=0.8)
          Length = 425

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 166 CGDFPRALQHTMTDLDDRFRTFGR 95
           C DF R + HT+    DR RT  R
Sbjct: 305 CTDFTRLIAHTVQTSPDRQRTLYR 328


>SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)
          Length = 513

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 71  FITGLGLASTEGPKPVVKVSHGVLQGA 151
           F+      ST  PKP++  +HG + GA
Sbjct: 464 FVVLFTSGSTGRPKPIMYTNHGFVNGA 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,475
Number of Sequences: 59808
Number of extensions: 150055
Number of successful extensions: 331
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)