Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O21
(250 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9) i... 26 3.0
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei... 26 4.0
At5g43370.1 68418.m05301 inorganic phosphate transporter (PHT2) ... 25 5.3
At5g43350.1 68418.m05299 inorganic phosphate transporter (PHT1) ... 25 5.3
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ... 25 5.3
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 25 5.3
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi... 25 7.0
At3g52810.1 68416.m05819 purple acid phosphatase (PAP21) identic... 25 7.0
At5g19400.1 68418.m02312 expressed protein 25 9.2
At3g29640.1 68416.m03732 hypothetical protein contains similarit... 25 9.2
At3g18830.1 68416.m02391 mannitol transporter, putative similar ... 25 9.2
At1g11270.3 68414.m01293 F-box family protein contains F-box dom... 25 9.2
At1g11270.2 68414.m01292 F-box family protein contains F-box dom... 25 9.2
At1g11270.1 68414.m01291 F-box family protein contains F-box dom... 25 9.2
>At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9)
identical to SUVH9 [Arabidopsis thaliana] GI:13517759;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH9 (SUVH9) GI:13517758
Length = 650
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 103 RSETCRQGQSWCAARRVESLHKGQDLCQFSGCTXTR 210
R E R ++ R ++ LH G +C+++G TR
Sbjct: 494 RLEVFRSLETGWGVRSLDVLHAGAFICEYAGVALTR 529
>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 268
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 143 QGAWKVSTKGRTYASFQGVPXRATSHWRIQI 235
QG + T+ YASF G+ S+W++ +
Sbjct: 178 QGYTSMQTQSAIYASFPGMSLGRVSNWQLPL 208
>At5g43370.1 68418.m05301 inorganic phosphate transporter (PHT2)
identical to inorganic phosphate transporter
[Arabidopsis thaliana] GI:2780348
Length = 524
Score = 25.4 bits (53), Expect = 5.3
Identities = 18/81 (22%), Positives = 33/81 (40%)
Frame = +2
Query: 8 GAHLHRRFHLSNIKMFLKLFIFITGLGLASTEGPKPVVKVSHGVLQGAWKVSTKGRTYAS 187
GA + F + + + F+ + + + P P V+ L +V R
Sbjct: 162 GAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPAPTYAVNRA-LSTPPQVDYIWRIIVM 220
Query: 188 FQGVPXRATSHWRIQI*RTAR 250
F +P T +WR+++ TAR
Sbjct: 221 FGALPAALTYYWRMKMPETAR 241
>At5g43350.1 68418.m05299 inorganic phosphate transporter (PHT1)
(PT1) identical to inorganic phosphate transporter
[Arabidopsis thaliana] GI:2258116
Length = 524
Score = 25.4 bits (53), Expect = 5.3
Identities = 18/81 (22%), Positives = 33/81 (40%)
Frame = +2
Query: 8 GAHLHRRFHLSNIKMFLKLFIFITGLGLASTEGPKPVVKVSHGVLQGAWKVSTKGRTYAS 187
GA + F + + + F+ + + + P P V+ L +V R
Sbjct: 162 GAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPAPTYAVNRA-LSTPPQVDYIWRIIVM 220
Query: 188 FQGVPXRATSHWRIQI*RTAR 250
F +P T +WR+++ TAR
Sbjct: 221 FGALPAALTYYWRMKMPETAR 241
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 288
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 122 KVSHGVLQGAWKVSTKGRTYASFQGVPXRATSH 220
K++ +G +K T G+ + S+Q + SH
Sbjct: 163 KINRATTKGRYKCETCGKVFKSYQALGGHRASH 195
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 61 TIYIYYRARFSFDRRSETCRQGQSWCAARRVESLHK 168
T I+Y+ R R+ TCR G+ A +E L +
Sbjct: 100 TANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQ 135
>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 691
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 124 GQSWCAARRVESLHKGQDLCQFSGCT 201
G+SW AARRV K L + GC+
Sbjct: 627 GESWDAARRVRLKMKEMGLRKKPGCS 652
>At3g52810.1 68416.m05819 purple acid phosphatase (PAP21) identical
to purple acid phosphatase GI:20257492 from [Arabidopsis
thaliana]; contains Pfam profile PF00149: Ser/Thr
protein phosphatase
Length = 437
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -3
Query: 242 FSKSVFSNGRLRVXVHPE---NWHRS 174
F +S F +GRLR+ H +WHR+
Sbjct: 381 FRESSFGHGRLRIIDHKRAHWSWHRN 406
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 121 QGQSWCAARRVESLHKGQDLC 183
QGQS ++R ++ H G+++C
Sbjct: 1048 QGQSTWSSRHFDTAHVGEEIC 1068
>At3g29640.1 68416.m03732 hypothetical protein contains similarity
to hypothetical proteins
Length = 171
Score = 24.6 bits (51), Expect = 9.2
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 7 RRAPPSKISSFEY*NVLKTIY-IYY---RARFSFDRRSETCRQGQSWCAARRVESLHKGQ 174
+ A K S +V+K Y IYY + +F+ + R Q WC A ++ +
Sbjct: 105 KTATTHKTSGQSEDDVMKLAYEIYYNDTKKKFNLEHTWRKLRYDQKWCEAATIKGNKNAK 164
Query: 175 DLC 183
C
Sbjct: 165 RKC 167
>At3g18830.1 68416.m02391 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 539
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 244 GSLNLYSPMGGCAXWYT 194
GSLN+YS +G CA T
Sbjct: 80 GSLNIYSLIGSCAAGRT 96
>At1g11270.3 68414.m01293 F-box family protein contains F-box domain
Pfam:PF00646
Length = 223
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -3
Query: 206 VXVHPEN-WHRSCPLWRL 156
+ V+P WHRSCPL L
Sbjct: 141 IVVNPATKWHRSCPLSNL 158
>At1g11270.2 68414.m01292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 312
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -3
Query: 206 VXVHPEN-WHRSCPLWRL 156
+ V+P WHRSCPL L
Sbjct: 141 IVVNPATKWHRSCPLSNL 158
>At1g11270.1 68414.m01291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 312
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -3
Query: 206 VXVHPEN-WHRSCPLWRL 156
+ V+P WHRSCPL L
Sbjct: 141 IVVNPATKWHRSCPLSNL 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,687,253
Number of Sequences: 28952
Number of extensions: 101704
Number of successful extensions: 229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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