Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O16
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    32   0.038
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.36 
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    29   0.36 
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    27   1.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   2.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   4.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   4.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   7.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   7.7  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   7.7  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 32.3 bits (70), Expect = 0.038
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +2

Query: 71  LTRVKMSQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 250
           +T  K+  P+ERS   Q      + T    Q +P   +S++ ++ T+SKHS  I     S
Sbjct: 433 VTIPKILSPHERSLLEQLADALNDSTARRTQSSPSGTNSSTSTSSTSSKHSTGI-----S 487

Query: 251 TQTARGSLAKRPTTLGSLF 307
           T+   G   K+  ++G  F
Sbjct: 488 TEPTTGEENKQDGSVGGFF 506


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 143 VTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQT 259
           V+  C + T +     SP T T    S + KSI+TSTQ+
Sbjct: 40  VSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQS 78


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 143 VTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQT 259
           V+  C + T +     SP T T    S + KSI+TSTQ+
Sbjct: 40  VSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQS 78


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   LDTMLPK-GKGTILHSFVMATDKSLNARENVAAIRALEQATMRIAREKRYQGVFATNTSP 177
           LD  LPK G    LHSF++  D SLN    ++A++   +  +R+             T P
Sbjct: 59  LDETLPKKGYEKALHSFIIHEDPSLN---YISALKETAKERIRVTVPVYSSRKSYVQTKP 115

Query: 178 LT 183
           +T
Sbjct: 116 IT 117


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 177 SYTATRHRHSRLRSTLGLSNQSVRRLKRREDLWQS 281
           S+  T  +H+R + ++  + +S +RLKR+ DL +S
Sbjct: 25  SFDPTLFQHARRKLSVDSTKKSPKRLKRQVDLQKS 59


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 89  SQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPST 202
           SQ   R+N+ +   RA + +RE +  +P+   ++SP +
Sbjct: 4   SQQSGRANELRTPGRANSSSREAVDSSPLFFPASSPGS 41


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 167 TPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRP 286
           TPV + S+S S+FT S +S  + +  ++T T   +++  P
Sbjct: 255 TPVTVSSSSLSSFTPS-YSTNLTTTGSTTTTGSATVSSSP 293


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 236 SISTSTQTARGSLAKRPTTLGSLFVGKQSTEMSSNKYKILVIN 364
           +++T++ T+ G++ +    + SLF G  S   SSN ++ILV N
Sbjct: 809 TVATASGTSTGTVLQ---VVPSLFPGCNSKCTSSNAFRILVEN 848


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +3

Query: 108  RTSDNANRARETLPGSVCNKHQSSYTAT---RHRHSRLRSTLGLSNQSVR-RLKRREDLW 275
            RT +++NR    L   +  K  SS + +   R  +  + + L  SN+S+R  L+R E++ 
Sbjct: 1194 RTVESSNRVIADLQRGITEKDVSSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVI 1253

Query: 276  QSVRRR 293
              +R +
Sbjct: 1254 TELREK 1259


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 26  RVQFFIHS*WRRTSPLTRVKMSQ 94
           R+Q + H   RRT+P+ R K +Q
Sbjct: 483 RIQHYSHPHPRRTNPILRTKSAQ 505


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 19  KGKGTILHSFVMATDKSLNARENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLAI 198
           K   T LH F +   KSL+   +VA  R  +Q      R+ +YQ  F+  T  L      
Sbjct: 111 KDDHTDLHDFDVKNLKSLSLPSHVAEDRTAQQ-----YRQNKYQLHFSRITFDLLLHFLF 165

Query: 199 D-IHGFEALLDYQINQYVD 252
           + +    +++   INQ++D
Sbjct: 166 ENVSNGGSIIIKLINQHID 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,974
Number of Sequences: 5004
Number of extensions: 31483
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)