Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O16
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 29 1.4
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 29 1.4
02_02_0446 + 10358658-10358948,10359093-10359286,10359762-10360167 29 2.5
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 28 3.3
11_01_0280 + 2080527-2080673,2081585-2081677,2081767-2081928,208... 28 3.3
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 28 4.4
10_05_0072 + 8839223-8839720 28 4.4
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 5.8
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 VLLHSNSPSTFTASKHSWTIKSISTSTQ--TARGSLAKR 283
+ LHSN FTA+K T+ + ST+ R SLA R
Sbjct: 455 IALHSNDGGPFTANKRIRTVPQFNASTEFGVGRTSLASR 493
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +3
Query: 9 DAPQRQGYNSSFIRNGDGQVP*RA*KCRSHTSARTSDNANRARETLPGSVCNKHQSSYTA 188
+ P G + S R +G A CR H S RT + + G NKH+ A
Sbjct: 612 ERPYSSGRHGSSGRMEEGTA---APSCR-HRSRRTDKRPSSSGRHGSGRTANKHERPAPA 667
Query: 189 TRHRHSRLRSTLGL 230
TR R R R L L
Sbjct: 668 TRPRQRRKRKYLYL 681
>02_02_0446 + 10358658-10358948,10359093-10359286,10359762-10360167
Length = 296
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 179 LHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGKQSTEM 331
L SNS + SK + S+STS Q G+ A TT + +G + E+
Sbjct: 58 LVSNSSGSMIRSKRQFVYGSVSTSVQLVPGNSAGTVTTFYTSSLGDKHDEI 108
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/81 (29%), Positives = 32/81 (39%)
Frame = +2
Query: 74 TRVKMSQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTST 253
TRVK QP+ S+ E +AR V E L + N F+ TI++ T
Sbjct: 214 TRVKREQPFTESDLE--ELQARIVVAENLPDDH--CYQNLMKLFSTVGSVKTIRTCYPQT 269
Query: 254 QTARGSLAKRPTTLGSLFVGK 316
G + R L LF K
Sbjct: 270 PNGTGPVTNRSAKLDMLFANK 290
>11_01_0280 +
2080527-2080673,2081585-2081677,2081767-2081928,
2082375-2082506,2083136-2083170,2083769-2083868,
2083990-2084283
Length = 320
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 154 LPGNVSRARFALSLVRALVWLRHFHAR*GTC 62
L G + R F +SL+R VWLR R G C
Sbjct: 245 LGGFLPRPVFPISLLRQEVWLRRLRRRRGGC 275
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 101 ERSNKRQCESRARNVTRECLQQTPVLLHSNSPSTFTAS 214
ER NK + VT +Q TP++ H SPS +S
Sbjct: 348 ERVNKVLADMNIPRVTTPAVQPTPLVQHDASPSQHRSS 385
>10_05_0072 + 8839223-8839720
Length = 165
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +1
Query: 52 MATDKSLNARENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLAIDIHGFEALLDY 231
MA + + + +A+ + + +ATM + ++K +GV + L + L D
Sbjct: 1 MAEENKSGSGDLMASGKVVAEATMSVFQQKSVEGVDKKEVAGAAADLLHSASTYGKLDDK 60
Query: 232 QINQYVD 252
+ QY+D
Sbjct: 61 PVGQYID 67
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +3
Query: 84 KCRSHTSARTSDNANRARETLPGSVCNKHQSSYTATRHRHSRLRSTLGLSNQSVRRLKRR 263
+C H+S+R+ ++ +RE G ++H+S + + + L + S RR +
Sbjct: 824 RCSRHSSSRSHRSSRHSREKYHGDTTDQHKSKKSEEGSKSRKDDCLLDDTLSSDRRKVQS 883
Query: 264 ED 269
ED
Sbjct: 884 ED 885
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,708
Number of Sequences: 37544
Number of extensions: 191125
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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