Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O16
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   2.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.8  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 182 HSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGS 301
           +SN+ S   + + S +  S +++   + G   +RP+T GS
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGS 56


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 182 HSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGS 301
           +SN+ S   + + S +  S +++   + G   +RP+T GS
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGS 56


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 92  QPYERSNKRQCESRARNVTRECLQQTPV 175
           +P +  +  Q E  A+N+ + CLQ+  +
Sbjct: 19  KPVKSMSADQVEKLAKNMRKSCLQKIAI 46


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 188 NSPSTFTASKHSWTIKSISTSTQ 256
           NSP +FTA  HS  + S S S Q
Sbjct: 69  NSPGSFTAGCHS-NLLSTSPSGQ 90


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 188 NSPSTFTASKHSWTIKSISTSTQ 256
           NSP +FTA  HS  + S S S Q
Sbjct: 69  NSPGSFTAGCHS-NLLSTSPSGQ 90


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 88   VAAIRALEQATMRIAREKRYQGV 156
            V A+RA+++  M + R   Y GV
Sbjct: 1049 VEAVRAVQRGEMSVHRAGSYYGV 1071


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 186 ATRHRHSRLRSTLGLSNQSVRRLKRR 263
           A RHR     +  G++  ++RRL RR
Sbjct: 16  AKRHRKVLGDNIQGITKPAIRRLARR 41


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 256  NGERIFGKASDDVRVIV 306
            +GER+  KAS+D R  V
Sbjct: 1578 DGERVMLKASEDYRYSV 1594


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 55  PLRMNEELYPC 23
           P   NEE YPC
Sbjct: 221 PASRNEEYYPC 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,495
Number of Sequences: 438
Number of extensions: 2214
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)