Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O16
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family pr...    28   2.8  
At5g56630.1 68418.m07070 phosphofructokinase family protein simi...    27   4.8  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    27   4.8  
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea...    27   4.8  
At2g26840.1 68415.m03220 expressed protein                             27   6.4  
At1g73160.1 68414.m08462 glycosyl transferase family 1 protein c...    27   6.4  
At1g72720.1 68414.m08409 expressed protein                             27   6.4  
At4g12700.1 68417.m01994 expressed protein                             27   8.5  
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ...    27   8.5  
At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family pr...    27   8.5  

>At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 686

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 266 GSLAKRPTTLGSLFVGKQSTEMSSNK 343
           GSLAK P+ +GSL+    + E+   K
Sbjct: 628 GSLAKNPSIMGSLYTASSNGELGGGK 653


>At5g56630.1 68418.m07070 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 485

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 79  RENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLAIDIH 207
           RE V+++  +      +  +  Y+G +A NT PL  ++  DIH
Sbjct: 111 REVVSSLSYMYGVKRILGIDGGYRGFYAKNTIPLNSKVVNDIH 153


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 213 EAVNVDGELL--CKRTGVCCKHSLVTFLARD 127
           + V++D E+L  C + G+CCK   V F+ ++
Sbjct: 132 QEVSIDDEVLFFCGKEGLCCKDGRVGFVVQE 162


>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           myosin heavy chain kinase B (SP:P90648)(GI:1903458)
           [Dictyostelium discoideum]
          Length = 415

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 102 SARTSDNANRARETLPGS--VCNKH--QSSYTATRHRHSRL 212
           S R S+NA R  +TLP +     K   QS+Y  TR  H RL
Sbjct: 129 SRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRL 169


>At2g26840.1 68415.m03220 expressed protein 
          Length = 273

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 148 GNVSRARFALSLVRALVWLRHFHAR*GTC--PSPLRMNEELYPCL 20
           G +  + F +  V A +W RHF    G+C      R+  EL+P L
Sbjct: 177 GTLVASGFCVIPVSASLWKRHFQLASGSCTKDDSRRVAAELFPSL 221


>At1g73160.1 68414.m08462 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 486

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/71 (21%), Positives = 27/71 (38%)
 Frame = -2

Query: 303 NDPNVVGRFAKDPLAXXXXXXXXXXVQECFEAVNVDGELLCKRTGVCCKHSLVTFLARDS 124
           N P++VG    D             + E  ++V  DG  + +  G+ CK   ++      
Sbjct: 401 NYPSIVGTVVVDERFGYTFSPNVRSLVETLDSVVRDGPRVLEMKGIACKGYALSMFTATQ 460

Query: 123 HCRLFERSYGC 91
               +ER + C
Sbjct: 461 MASAYERFFMC 471


>At1g72720.1 68414.m08409 expressed protein 
          Length = 127

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 107 SNKRQCESRARNVTRECL-QQTPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKR 283
           +NK  C S       E   QQ PV++ S S ST+ A ++   ++  S +       + K+
Sbjct: 17  TNKYHCFSHGEKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKK 76


>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 164 QTPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGKQSTEMSSN 340
           + P+   S+  +TF  S  + T+KS  +  +T    +A   T  G  F+     E S N
Sbjct: 51  EDPLFHPSDKITTFLTSNSNATLKSDDSIVKTGEDFMAANQTAFGG-FINIADVETSEN 108


>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 538

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 173 VLLHSNSPSTFTASKHSWTIKSISTSTQTAR 265
           VLLHS+S S F +S  S ++  IS++  T++
Sbjct: 10  VLLHSHSLSRFQSSSSSCSVYLISSARTTSK 40


>At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family
           protein contains similarity to putative bHLH
           transcription factor GB:AAC63587 GI:3738090 from
           [Arabidopsis thaliana]
          Length = 308

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 61  DKSLNARENVAAIRALEQATMRIAR---EKRYQGVFATNTSPLT 183
           DKS    E V++I++LEQ   ++     EK      +TNT+P T
Sbjct: 104 DKSTIVDEAVSSIKSLEQTLQKLEMQKLEKLQYSSASTNTTPTT 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,926,978
Number of Sequences: 28952
Number of extensions: 158093
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)