Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O15
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 58 3e-10
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 39 2e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 35 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.009
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.021
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 30 0.086
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.15
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.15
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 0.61
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 0.80
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 4.3
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 24 5.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 5.6
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 24 5.6
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 7.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 23 7.5
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 7.5
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 9.9
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 23 9.9
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 58.0 bits (134), Expect = 3e-10
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGIS 139
GHPKGFAYIEF + V A+ ++ S+ R +KV PKRTN PG+S
Sbjct: 93 GHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMS 138
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.7 bits (86), Expect = 2e-04
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +2
Query: 5 HPKGFAYIEFGD-KDSVQTAMAMDESLFRGRQIKVMPKR 118
+PKGFAYI+F D D+V+ + +D F+GR + V+P +
Sbjct: 362 NPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 14 GFAYIEFGDKDSVQTAM-AMDESLFRGRQIKV 106
GF ++EF DK S AM AM+ + G ++++
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.1 bits (77), Expect = 0.002
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAMAMDE-SLFRGRQIKVMPKRTNKP 130
KGFAYI+F D V A+ ++E + GR +++M ++ KP
Sbjct: 311 KGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKSTKP 351
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.1 bits (72), Expect = 0.009
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRPPRTM 166
KGFAY++F +D+++ A+ E GR I + ++N ++P T+
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILI---KSNTDFSGRPSKPANTL 213
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.021
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G KG AY+EF +DSVQ A+A+ G + V K
Sbjct: 278 GRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEK 319
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.9 bits (64), Expect = 0.086
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 41 KDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRPP 157
++ ++A+A + SL G P NKP SST++PP
Sbjct: 425 ENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPP 463
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.15
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 106
G KGF Y+ F D DS + + M+ GR ++
Sbjct: 404 GRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRL 438
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.15
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 106
+GF Y+EF D++ A+A+ GR +++
Sbjct: 133 RGFGYVEFETADTLSAALALSGEDLMGRPVRI 164
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 0.61
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 106
G P+GF ++ + ++ +V+ M+ G+ ++V
Sbjct: 285 GRPRGFGFVTYENESAVEATMSQPYITIHGKPVEV 319
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 0.80
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 133 YIIDEPSATYDARPR---TRVPRRFLAILRR 216
Y+IDEPSA D+ R ++V RRF+ R+
Sbjct: 477 YLIDEPSAYLDSEQRIIASKVIRRFIVNSRK 507
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 1.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAM------AMDESLFRGRQIKVMPKRTNKPGISSTNR 151
G+ KG+A IE+ + Q A+ +DE L P+R +P IS+ +R
Sbjct: 48 GYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLEVDFAFLEPPERAPRPSISTRSR 103
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.2 bits (50), Expect = 4.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 127 TRYIIDEPSATYDARPRTRVPRRFLAILRRLPARTSRQVHPILDY----SHYSLSV 282
+ +++ PS D R TR LA++ +P VHP+ Y S+++LS+
Sbjct: 309 SNFLLSSPSLFSDTR--TRPASYALALIITVPYEYDEIVHPVSTYYTMLSNFTLSL 362
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 96 WRPLNNDSSIAIAVCTLSLSPNS 28
W P+ N +SI + + L LSPN+
Sbjct: 113 WNPVLNLNSILVGLQFLFLSPNA 135
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 23.8 bits (49), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 271 SSESSQVWGVPAATYGPVADVVWRETAAEPASA 173
S+ S W PA++ P W++ AA P SA
Sbjct: 419 STSSPAPWAKPASSAAPSNPAPWQQPAA-PQSA 450
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 23.8 bits (49), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 77 SLFRGRQIKVMPKRTNKPGISSTNRP 154
+LFR + I MPK+ KP S RP
Sbjct: 281 TLFRRKTI--MPKKDKKPSHKSNGRP 304
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 95 QIKVMPKRTNKPGISSTNRPPRTM 166
Q++ + + KP + ST PPR +
Sbjct: 534 QVQTIDDASKKPTLQSTTTPPRKL 557
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 23.4 bits (48), Expect = 7.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 129 QVYHRRTVRHVRCEAADAGSAAVSRHTTSATGPYVAAGT 245
Q H TV HV + + S + + TS PY +A +
Sbjct: 288 QNQHITTVDHVHPQVSMTPSLSTNNTATSVPAPYSSAAS 326
>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 170
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 242 TCRDVRAGSRRSMARNRR 189
T R +RA RR+ RNRR
Sbjct: 91 TSRPIRASRRRANLRNRR 108
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 241 VHPILDYSHYSLSVSSL 291
+HP L Y+ Y +S SSL
Sbjct: 15 IHPALHYATYRVSPSSL 31
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.0 bits (47), Expect = 9.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKR 118
GH K Y+ + D Q A A D++ R K P+R
Sbjct: 468 GHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKDNPRR 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,844
Number of Sequences: 5004
Number of extensions: 17697
Number of successful extensions: 72
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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