Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O15
(302 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 41 2e-04
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 41 2e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.025
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.034
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 32 0.078
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 32 0.10
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.14
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.14
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.24
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 29 0.72
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_28005| Best HMM Match : PGAMP (HMM E-Value=6.9) 27 3.9
SB_23286| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_7604| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 27 3.9
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 26 5.1
SB_36427| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-25) 26 5.1
SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5) 26 5.1
SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 25 8.9
SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2) 25 8.9
SB_3654| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.57) 25 8.9
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 112
G KG+AY+EF ++ +VQ A+AMD GR + + P
Sbjct: 3 GRSKGYAYVEFNNESTVQAALAMDREKMEGRPMFISP 39
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKP 130
G KGF Y+ F KD+V A+ M+ + F+GR+I+V P + +KP
Sbjct: 94 GIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSK-DKP 135
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.9 bits (74), Expect = 0.025
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTA-MAMDESLFRGRQIKV-MPKRTNKPGISSTNRPP 157
G PKG+ Y+E+ + S TA + +D++ +GR I V + + G PP
Sbjct: 208 GKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTISVALSNPPTRRGPPRQEHPP 261
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.5 bits (73), Expect = 0.034
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKVMPKRTNK 127
P+GFA++ FG K +++ A+ +D F GR +KV R+ +
Sbjct: 269 PRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSRE 309
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G P+GF ++ FG +D + A+ F G + P + NK
Sbjct: 47 GRPRGFGFVTFGSEDEMDKAI----DKFDGEDLDGRPMKVNK 84
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 32.3 bits (70), Expect = 0.078
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKV 106
G P+GF ++ FG K+ ++ A+ D F GR +KV
Sbjct: 42 GRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKV 77
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G P G A+++F K ++ A+ ++ +GR I++ K TN+
Sbjct: 204 GQPSGCAFVDFSSKSDLEKALKRNKDYLQGRYIELF-KDTNR 244
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
G +GF Y +F K+ A+ ++ GR+I++ P +KP N P
Sbjct: 216 GRSRGFGYADFTSKEDYNKALELNGEDCCGREIRINP-ANSKPSRGGGNTP 265
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKR 118
G P +AYIEF + ++ +A+ ++F G+ IK R
Sbjct: 108 GKPTRYAYIEFAETQAIVSALQYSGAIFGGKPIKSRSSR 146
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G P+GF ++ FG K+ ++ A+DE F G+ + P + N+
Sbjct: 134 GRPRGFGFVTFGSKEEME--KAIDE--FDGQDLDGRPMKVNE 171
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 274 ESSESSQVWGVPAATYGPVADVVWRETAAEPASAAS 167
E S+S + W PA Y V W + + P+SA S
Sbjct: 468 EISDSRRAWPAPAQYYADSRCVSWTQDSKPPSSACS 503
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 181 RVPR-RFLAILRRLPARTSRQVHPILDYSHYSLSVSSLP 294
R P+ + +++ RLP SR H L +HYS V+ P
Sbjct: 449 RYPKINYSSLVTRLPLSVSRYCHSSLLVNHYSQLVNRYP 487
>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 133 YIIDEPSATYDARPRTRVPRRFLAILRRLPARTSRQVHPILDYSHYSLSVSSLPL 297
Y+I Y + + +RF ++ RR+P R++ LD + SLS S++ L
Sbjct: 28 YMIGSEVGHYLGLMKGALYKRFPSLWRRIPTLEERKIILSLDIGYTSLSNSNIML 82
>SB_28005| Best HMM Match : PGAMP (HMM E-Value=6.9)
Length = 196
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKR 118
G P GF +++ TA+A D + + Q+ +P+R
Sbjct: 57 GSPPGFNQVDWDATTITVTALAWDGAAYHSHQVWRLPRR 95
>SB_23286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 166 ARPRTRVPRRFLAILRRLPARTSRQVHPILDYSHYSLSVSSLPLH 300
A P VP+ +L R+ + R ++P L Y + S PLH
Sbjct: 49 ASPAWAVPQYLSDMLERVQKKALRVIYPNLQYDQALNAASLEPLH 93
>SB_7604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRG 91
G PK YI F ++DSV+ + + +S+ G
Sbjct: 135 GQPKSRGYISFRNEDSVRPVIIIGDSMVCG 164
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKVMPKRTNKP 130
+GFAY+E+ D + + A+ MD G++I V +P
Sbjct: 1198 RGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPRP 1238
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 148 PSATYDAR--PRT----RVPRRFLAILRRLPARTSRQVHPILDYSHYSLSVSS 288
P A Y R PR R PRR + + RLP + RQ + LD S SS
Sbjct: 1112 PDAEYSPRESPRESLQQRTPRRSHSEVSRLPVKADRQHYSSLDLSSPETPTSS 1164
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKP 130
+ FA+IE + AMA D + +G+ +K+ + +P
Sbjct: 609 QNFAFIELRSVEETTQAMAFDGIILQGQALKIRRPKDYQP 648
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKVMP 112
+GF ++ F + + QTA+ +++ +GR +K+ P
Sbjct: 99 RGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAP 133
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKV--MPKRTNKPGISSTNRPPR 160
G PKG+ + E+ D+++ +AM ++ GR ++V NK I S R
Sbjct: 63 GKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEKNKEEIKSMEMTAR 118
>SB_36427| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-25)
Length = 314
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = -2
Query: 223 PVADVVWRETAAEPASAASHXXXXXXXXXXXWFIRPFRHHLYLATSK 83
P+ VW A A+S+ I PFRHH ++ ++
Sbjct: 93 PLVKKVWLHCANFTFLASSYNLCALTLDRYMAVIHPFRHHAFMTPAR 139
>SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)
Length = 220
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 248 GCTCRDVRAGSRRSMARNRRGTRVRGLASYVADGSSM 138
GC CR + + RSM R RG R R L + G S+
Sbjct: 111 GCACRPGGSHAMRSM-RTWRGGRRRALCVHFRRGESL 146
>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +1
Query: 136 IIDEPSATYDARPRTRVPRRFLAILRRLPARTSRQV 243
+++E + D +TR P++FL L+ L + ++++
Sbjct: 69 LMEEKNKNSDKSEKTRKPKKFLKSLKNLKEKEAKKI 104
>SB_1337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 187 PRRFLAILRRLPARTSRQVHPILDYSHYSLSVSSLP 294
P L+++ RLP +R H L +HYS V+ P
Sbjct: 64 PLSSLSLVTRLPLSVTRYRHSPLLVNHYSQLVNRYP 99
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 121
G +GF ++ + DSV + + + R+I+ PKR+
Sbjct: 86 GRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIE--PKRS 123
>SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 138 HRRTVRHVRCEAADAGSAAVSRHTTSATGPYVAAGTP 248
H +TV + AG+ ++SRH+ + G ++ TP
Sbjct: 607 HTQTVSCINVGTNAAGNQSISRHSPTMQGQADSSNTP 643
>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
Length = 334
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +3
Query: 114 NGRINQVYHRRTVRHVRCEAADAGSAAVSRHTTSATGPYVAAGTPHT 254
N R + V + A + ++ +S+H S T P A PH+
Sbjct: 234 NSRASSYNSDSAVSGITIRAVNTEASTISKHKVSLTKPATEARGPHS 280
>SB_3654| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.57)
Length = 247
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 253 VWGVPAATYGPVADVVWR 200
+W VPAA V D VWR
Sbjct: 227 MWSVPAAVKYQVTDKVWR 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,130
Number of Sequences: 59808
Number of extensions: 140222
Number of successful extensions: 407
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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