Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O15
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   5.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 171 AADAGSAAVSRHTTSATGPYVAAGTPH 251
           +  + S + +  TTS+  PYV+A   H
Sbjct: 72  SGSSASTSPAARTTSSMYPYVSAAAAH 98


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 168 EAADAGSAAVSRHTTSATGPYVAAGTPHT*LLSLLSQ 278
           +++D+G+AA  R   SA+     A + HT   + LS+
Sbjct: 261 DSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSE 297


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 130 RYIIDEPSATYDARPRTRVPRR 195
           RY      + YD+RP+ ++ +R
Sbjct: 357 RYNTPSKRSDYDSRPQYQIDKR 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,053
Number of Sequences: 438
Number of extensions: 1091
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)