Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_O15
(302 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 62 9e-11
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 62 9e-11
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 60 3e-10
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 58 9e-10
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 38 0.002
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.005
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.009
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.009
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.009
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 33 0.028
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 33 0.028
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 33 0.028
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 33 0.037
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.048
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 32 0.085
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.11
At4g10610.1 68417.m01735 RNA-binding protein, putative 31 0.11
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 0.11
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.15
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 0.26
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 0.34
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 0.34
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 30 0.34
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 29 0.45
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 0.45
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 0.45
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 29 0.45
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 29 0.45
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 29 0.79
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 0.79
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 1.0
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 28 1.0
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 28 1.0
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 1.0
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 28 1.4
At5g24440.1 68418.m02880 RNA-binding protein, putative 27 1.8
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 1.8
At1g51960.1 68414.m05857 calmodulin-binding family protein conta... 27 1.8
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 2.4
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 27 2.4
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 27 2.4
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 27 2.4
At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak sim... 27 3.2
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 27 3.2
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 26 4.2
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 26 4.2
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 26 5.6
At4g30300.1 68417.m04306 ABC transporter family protein ribonucl... 25 7.4
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 25 7.4
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 25 9.7
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 25 9.7
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 25 9.7
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 61.7 bits (143), Expect = 9e-11
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGI 136
G PKGFAY+EF + ++VQ A+ ++ES GRQ+KV PKRTN PG+
Sbjct: 126 GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 170
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 61.7 bits (143), Expect = 9e-11
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGI 136
G PKGFAY+EF + ++VQ A+ ++ES GRQ+KV PKRTN PG+
Sbjct: 126 GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 170
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 60.1 bits (139), Expect = 3e-10
Identities = 25/45 (55%), Positives = 35/45 (77%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGI 136
G PKGFAY+EF + ++VQ A+ ++ES GRQ+KV+ KRTN PG+
Sbjct: 129 GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGL 173
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 58.4 bits (135), Expect = 9e-10
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGI 136
G PKGFAY+EF + ++VQ ++ ++ES GRQIKV KRTN PG+
Sbjct: 140 GQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGM 184
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 5 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 106
HPKG A++ F K+SV A+A+ ++F R IKV
Sbjct: 484 HPKGTAFVTFATKESVGKAVALSGTMFYSRPIKV 517
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVM 109
G P G AYIEF K++ + A+++D + F R +K++
Sbjct: 554 GQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKIV 589
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 5 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
H K FA++E + AM++D +F G +KV P +++T P
Sbjct: 284 HEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 5 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
H K FA++E + AM++D +F G +KV P +++T P
Sbjct: 284 HEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 5 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
H K FA++E + AM++D +F G +KV P +++T P
Sbjct: 284 HEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 33.5 bits (73), Expect = 0.028
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNR 151
+A++EF D SV+ A+ GRQ+ + +R N G+ R
Sbjct: 301 YAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARR 345
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 33.5 bits (73), Expect = 0.028
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNR 151
+A++EF D SV+ A+ GRQ+ + +R N G+ R
Sbjct: 360 YAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARR 404
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.028
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGDK-DSVQTAMAMDESLFRGRQIKVM 109
G P+GFA++EF D D+ + +M+ F GR+I V+
Sbjct: 85 GQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.1 bits (72), Expect = 0.037
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 5 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
H K FA++E + AMA+D + G +KV P +++T P
Sbjct: 300 HEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGP 349
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 32.7 bits (71), Expect = 0.048
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV---MPKRTNKPGISS 142
P+GF ++ F +DSV + G+Q++V +PK N PGI+S
Sbjct: 150 PRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDAN-PGIAS 196
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 31.9 bits (69), Expect = 0.085
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
FA+IEF D++ TA+ + ++ +KV+P +T ++ T P
Sbjct: 214 FAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLP 259
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTN 148
G P+GF ++ + D SV + D + G+Q+++ KRT G S+N
Sbjct: 80 GQPRGFGFVTYAD-SSVVDKVIQDNHIIIGKQVEI--KRTIPRGSMSSN 125
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
FA+IEF D+ +TA+ + ++ +KVMP +T ++ T P
Sbjct: 191 FAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLP 236
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRPPR 160
G KG+ +IEF + Q A+ M+ L GR +++ N+ G + P R
Sbjct: 421 GSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRL--DLANERGTPRNSNPGR 471
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G P+GF +I+F D D+ + MD L GR++ V+ N+
Sbjct: 75 GDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENR 117
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 106
G +GFA++ F + AM +D GR+I+V
Sbjct: 72 GRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRV 106
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKVMP 112
G +GF ++ F D+ + A++ MD GR I+V P
Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKVMP 112
G +GF ++ F D+ + A++ MD GR I+V P
Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTNRP 154
FA+IEF +++ + A++M ++ +KV+P +T ++ T P
Sbjct: 210 FAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLP 255
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 29.5 bits (63), Expect = 0.45
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 112
G P G A++EF + + + AM D R I++ P
Sbjct: 300 GRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFP 336
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPG 133
G P+GF +I F D SV + D + G+Q+++ KRT G
Sbjct: 57 GQPRGFGFITFAD-PSVVDKVIEDTHVINGKQVEI--KRTIPKG 97
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPG 133
G P+GF +I F D SV + D + G+Q+++ KRT G
Sbjct: 57 GQPRGFGFITFAD-PSVVDKVIEDTHVINGKQVEI--KRTIPKG 97
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKVMPKRTNKPG 133
G KGF ++ F D+DS++TA+ M+ GR I + + G
Sbjct: 82 GRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQARGSGTRG 126
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G P+GF +++F D D+ MD L GR++ V+ N+
Sbjct: 74 GDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENR 116
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV---MPKRTNKPG 133
P+GF ++ F +D+V + + G+Q++V +PK N G
Sbjct: 150 PRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG 194
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGISSTN 148
P+GF ++ + +DSV+ M + ++++V + K GI S N
Sbjct: 160 PRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEV-KRAIPKEGIQSNN 205
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKV 106
PKGF +I F +D Q A+ A++ + GR I V
Sbjct: 106 PKGFGFITFESEDDAQKALKALNGKIVNGRLIFV 139
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 11 KGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKVMP---KRTNKPGISSTNRPPRT 163
+G AYI + + AM +D S F+GR + ++P + T+ ++ T+ P+T
Sbjct: 302 RGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKT 356
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTA-MAMDESLFRGRQI 100
PKGFAY+ F K+ + A + ++ L GR +
Sbjct: 61 PKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 121
FA++EF D ++A+++ ++ ++V+P +T
Sbjct: 169 FAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKT 203
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKV---MPKR 118
G KG+ ++ FGD++ AM M+ + RQ++V PKR
Sbjct: 252 GRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 121
FA+IEF D + ++A+ ++F I+V +T
Sbjct: 178 FAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKT 212
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 127
G +GFA+IEF DS AM + G++I + +RT K
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI-LCVQRTPK 94
>At1g51960.1 68414.m05857 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 351
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 154 ATYDARPRTRVPRRFLAILRRLPART-SRQVHPILDYSHY 270
AT+D R RT++ + +RR +R+ SRQVH ++ S Y
Sbjct: 187 ATFDDR-RTKIVEKDDRYMRRSSSRSRSRQVHNVVSMSDY 225
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 178 TRVPRRFLAILRRLPARTSRQVHPILDYSHYSLSVSSLP 294
T VP R L RR+ +R PIL+ S + ++S LP
Sbjct: 91 TSVPTRSLR--RRISSRKKSSTKPILNESKFQETISKLP 127
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 PKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKV 106
PKGF +I F +D + A+ ++D + GR I V
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFV 80
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 17 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 121
FA++EF D A+++ ++ ++V+P +T
Sbjct: 182 FAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKT 216
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESL-FRGRQIKV 106
G PKG+ + E+ D+++ +A +S GRQ++V
Sbjct: 47 GKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRV 82
>At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak
similarity to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; contains Pfam profiles PF04824:
Conserved region of Rad21 / Rec8 like protein, PF04825:
N terminus of Rad21 / Rec8 like protein; supporting cDNA
gi|18157648|gb|AF400129.1|AF400129
Length = 1031
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 32 FGDKDSVQTAMAMDESLFRGRQI 100
FGD D+ Q A+ +DE++F+ + +
Sbjct: 164 FGDGDTSQAALDLDEAVFQDKDV 186
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 97
G KG+ ++ F D DS A+A + GR+
Sbjct: 55 GKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKV---MPKR 118
G KG+ ++ FGD++ A+ M+ + RQ++V PKR
Sbjct: 241 GRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 169 RPRTRVPRRFLAILRRLPARTSRQVHPILDYSHYSLSVSSLP 294
R ++VP R L RR+ R PIL+ S + ++S LP
Sbjct: 80 RTSSQVPTRSLR--RRISNRKKSSAKPILNVSKFHETISKLP 119
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 112
G G A++EF + + AMA D+ R +++ P
Sbjct: 238 GKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFP 274
>At4g30300.1 68417.m04306 ABC transporter family protein
ribonuclease L inhibitor - Mus musculus,PIR2:JC6555
Length = 181
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1
Query: 133 YIIDEPSATYDARPR---TRVPRRFLAILRR 216
Y+IDEPSA D+ R ++V +RF+ +++
Sbjct: 137 YLIDEPSAFLDSEQRIIASKVIKRFILQMKK 167
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 106
G +GF ++EF + Q A+ GR+I++
Sbjct: 335 GSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRL 369
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 GHPKGFAYIEFG-DKDSVQTAMAMDESLFRGRQIKV 106
G PKGFA+++F KD+ + +F R I V
Sbjct: 369 GLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAV 404
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 97
G KG+ ++ F + DS A+A + GR+
Sbjct: 55 GKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 2 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 97
G KG+ ++ F + DS A+A + GR+
Sbjct: 55 GKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,729,706
Number of Sequences: 28952
Number of extensions: 94025
Number of successful extensions: 328
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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