Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O14
         (594 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1; Carboxyd...    33   6.7  
UniRef50_A4V791 Cluster: Putative helicase; n=1; Pseudomonas flu...    33   6.7  
UniRef50_Q3VMD1 Cluster: TPR repeat; n=2; Bacteria|Rep: TPR repe...    32   8.8  
UniRef50_Q9M386 Cluster: Putative uncharacterized protein F24B22...    32   8.8  

>UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1;
           Carboxydothermus hydrogenoformans Z-2901|Rep:
           Pseudouridylate synthase - Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008)
          Length = 246

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 385 KRKAISSYLDY-QHGPFYRRYRSALPKKLSM-RSTQC*DY---THTYVSIGNTSISPRKL 549
           ++K    YL Y    PFY RY  ALP+KL   +  +  +Y   TH +   G    S +  
Sbjct: 110 RKKEYRYYLYYGPPSPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNP 169

Query: 550 VKTM 561
           +KTM
Sbjct: 170 IKTM 173


>UniRef50_A4V791 Cluster: Putative helicase; n=1; Pseudomonas
           fluorescens SBW25|Rep: Putative helicase - Pseudomonas
           fluorescens SBW25
          Length = 554

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +1

Query: 349 LQRWTSDEESIKKRKAISSYLDYQHGPFYRRYRSALPKKLSMRSTQC*DYTHTYVSIGNT 528
           ++ W SD + +   +A+ SYL  Q   F RR R  + ++L   ST   D  H   ++ + 
Sbjct: 281 IREWCSDGQHVSDPEALGSYLREQK-VFLRRTREDVGRQLPQVSTMVEDIAHDQKALKSI 339

Query: 529 SISPRKL 549
               RKL
Sbjct: 340 EEIARKL 346


>UniRef50_Q3VMD1 Cluster: TPR repeat; n=2; Bacteria|Rep: TPR repeat -
            Pelodictyon phaeoclathratiforme BU-1
          Length = 4489

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 369  RGVNQETESHFVVSGLSAWAILSTLSFGAAEETFDEIHTVLRLHPHVCFNWKYFNISKEI 548
            R + +E   HF    L A       +F  A E FD+  T+   HP+   NW   N  KE+
Sbjct: 2301 RKILREDPEHFDALQLLATIAAQKKNFSEAVELFDQAFTINSNHPNSLNNWG--NALKEL 2358

Query: 549  GENDGGVLQHSGAM 590
               D  +  +  A+
Sbjct: 2359 KRYDEAISSYDKAV 2372


>UniRef50_Q9M386 Cluster: Putative uncharacterized protein
           F24B22.160; n=2; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein F24B22.160 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 235

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 113 SIKPDRSRAKTEPSTHVITSPLDDVS--KTQSFRTGDRKKL 229
           SIKPD  + + +P+T ++  P  + S  +TQS  TG  KKL
Sbjct: 5   SIKPDDKKEEEKPATAMLPPPKPNASSMETQSANTGTAKKL 45


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,833,591
Number of Sequences: 1657284
Number of extensions: 10501998
Number of successful extensions: 26448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26444
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)