Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O14
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.1  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   6.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   8.3  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   8.3  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   8.3  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 139 GTAAVR--FNRNALVHLYISDITKENTGFNYNKTNLISI 29
           GT   R  FN+N  V LY+ D  K    FN N+ +LI +
Sbjct: 806 GTRVYRNMFNQNKFVELYLMDDMKRE--FNVNQMDLIKL 842


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 483 CGSHRKFLRQRRTIASIEWPMLIVQIRRNGF 391
           CG  R FLR++RT        L+V++ + G+
Sbjct: 143 CGRERAFLRKKRTKIQCSHFDLLVKLGQGGY 173


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 553 SPISLEILKYFQLKHTCGCSLSTVWISSKVSSAAPNDSVDRMAHADSPDTTKW 395
           S I+ EI+ +   K+  G  +   W S K+S    + SVD+ +       T W
Sbjct: 283 SLINPEIISFTPAKYLIG--IGAAWFSEKLSRERKSISVDKTSKRAILAPTNW 333


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 57  LNPVFSLVISEMYKCTSAFRLNRTAAVPKPSPRHMLSP 170
           L P+FSLV   +Y  +S +R  +    P P     ++P
Sbjct: 515 LAPIFSLVNCVLYIRSSVYRFTKMVKKPVPCRVDSIAP 552


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 397 ISSYLDYQHGPFYRRYRSA 453
           I+ Y +Y++G FYR  RSA
Sbjct: 188 INIYSNYRNGKFYREARSA 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,643
Number of Sequences: 5004
Number of extensions: 45800
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)