Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O14
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543...    31   0.69 
03_06_0660 - 35349264-35349375,35349914-35350017,35350211-353503...    29   2.1  
04_03_0991 - 21500143-21500799,21500834-21501172                       29   3.7  
06_01_0912 - 7036420-7037503,7037599-7037819                           28   4.9  
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848...    28   6.5  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    27   8.5  

>08_02_0715 -
           20352613-20352852,20352926-20352982,20354208-20354339,
           20354754-20354828,20355779-20355943,20356031-20356263,
           20356484-20356574,20356789-20357223,20357911-20357976,
           20358688-20358807,20358915-20359121
          Length = 606

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 KRSLYGLQRWTSDEESIKKRKAISSYLDYQHGPFYRRYR 447
           K   + L +WT DEE   K K + +Y D +  P+Y   R
Sbjct: 531 KMITFALTQWTKDEEEAFKAKVVEAY-DKEGSPYYSTAR 568


>03_06_0660 -
           35349264-35349375,35349914-35350017,35350211-35350368,
           35350899-35350986,35352927-35353025,35353377-35353472,
           35353591-35353628,35357960-35358285,35358600-35358796
          Length = 405

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 427 PFYRRYRSALPKKLSMRSTQC*DYTHTYVSIGNTSISPRKLVKTMAVSYNIPVRCS 594
           P  RR+R A P++     TQC    H+   +  TS+  RK  +   +S +   RC+
Sbjct: 83  PSQRRHREAQPRRSMGNPTQC-ARIHSRWRVHPTSLEARKANQDATMSGSTEARCA 137


>04_03_0991 - 21500143-21500799,21500834-21501172
          Length = 331

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 387 TESHFVVSGLSAWAILSTLSFGAAEETFDEIHTVLRLHPHVCFNWKYFNISKEIGENDGG 566
           ++ H  + GL A    + ++F  + +TF     VL     V F  + F  SKE+G   GG
Sbjct: 160 SDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAARSPV-FRAELFGPSKELGATTGG 218

Query: 567 VLQHS 581
            + H+
Sbjct: 219 AVDHT 223


>06_01_0912 - 7036420-7037503,7037599-7037819
          Length = 434

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 577 CCKTPPSFSPISLEILKYFQLKHTCGCSLSTVWISSKVSSAAPND-SVDRMAHA 419
           CC  P     +   +L+YF    T   ++S+  +  + S+AA  D SV R   A
Sbjct: 42  CCSPPGGHQAVFSPLLQYFNGNGTYSSNISSSGVEERSSAAASCDYSVGRWVRA 95


>03_05_0939 -
           28983091-28983747,28983805-28983913,28984245-28984801,
           28985197-28985414,28985508-28985613,28986352-28986429
          Length = 574

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 444 SFGAAEETFDEIHTVLRLHPHVCFNWKYFNIS 539
           SFGA  + FD+   V R+     FNW YF+I+
Sbjct: 189 SFGA--DQFDDTDPVERIQKGSFFNWFYFSIN 218


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 84  SEMYKCTSAFRLNRTAAVPKPSPRHMLSP 170
           S +Y+C+S   +N     P PS R + SP
Sbjct: 56  SRLYECSSTLPVNPAEEAPTPSSRPVSSP 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,113
Number of Sequences: 37544
Number of extensions: 289457
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)