Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O14
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  30   1.6  
SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7)               29   2.1  
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -3

Query: 586 APECCKTPPSFSPISLEILKYFQLK---HTCGCSLSTVWISSKVSS 458
           A  C K  P+F   S ++L YF  K   + CG S    W     SS
Sbjct: 660 AQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGASFDGTWQRKGYSS 705


>SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7)
          Length = 834

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = -3

Query: 577 CC--KTPPSFSPISLEILKYFQLKHTCGCSLSTVW----ISSKVSSAAPNDSVDRMAHAD 416
           CC   +PP          +Y +  H+ GC++  VW    + SKV ++  N      AH D
Sbjct: 25  CCPASSPPRLPDDHPAYQEYTEATHSMGCAIGDVWQAAQVESKVWNSRENLGAQPHAHID 84


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 125 DRSRAKTEPSTHVITSPLDDVSKTQSFRTGDRKKLS 232
           D  R+  + S     + L DVS  +S RTG RKK S
Sbjct: 278 DSLRSNDQKSNASSDASLADVSSVESVRTGTRKKSS 313


>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 140 KTEPSTHVITSPLDDVSKTQSFRTGDRKKLSTW 238
           K +  +HVI   +DDV+++++  T  RK    W
Sbjct: 6   KVQNCSHVICDVIDDVTRSKNMLTSSRKGNIIW 38


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 126 TAAVPKPSPRHMLSPVH*MTCPKLSHSARVTEKNYRH 236
           T+ +P P P   L P   ++CP    ++R+T +  RH
Sbjct: 206 TSCIPNPVPSG-LRPASRVSCPASRITSRITSRRRRH 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,632
Number of Sequences: 59808
Number of extensions: 342216
Number of successful extensions: 924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)