Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O14
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-2|AAD03129.2|  255|Caenorhabditis elegans Hypothetical ...    30   1.1  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    29   3.3  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    29   3.3  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    29   3.3  
Z81077-12|CAH19097.1|  316|Caenorhabditis elegans Hypothetical p...    27   7.6  

>AF106583-2|AAD03129.2|  255|Caenorhabditis elegans Hypothetical
           protein F23C8.5 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +2

Query: 65  RIFLGDIRNV*MYQRISIKPDRSRAKTEPSTHVITSPLDDVSKTQSFRTGDRKKLST 235
           +I +G  R V    +I +KPDRS   TE   H + +P D+++  ++ +  + KKL+T
Sbjct: 2   KILVGVKRVVDYAVKIRVKPDRSGVVTEGVQHSM-NPFDEIALEEAVKLKE-KKLAT 56


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +3

Query: 492 RLHPHVCFNWKYFNISKEIGENDGGV 569
           R+HPH   ++++ N ++E+ +N+G +
Sbjct: 491 RMHPHTSNSFEFLNCNQEMNKNEGAL 516


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +3

Query: 492 RLHPHVCFNWKYFNISKEIGENDGGV 569
           R+HPH   ++++ N ++E+ +N+G +
Sbjct: 511 RMHPHTSNSFEFLNCNQEMNKNEGAL 536


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +3

Query: 492 RLHPHVCFNWKYFNISKEIGENDGGV 569
           R+HPH   ++++ N ++E+ +N+G +
Sbjct: 527 RMHPHTSNSFEFLNCNQEMNKNEGAL 552


>Z81077-12|CAH19097.1|  316|Caenorhabditis elegans Hypothetical
           protein F36A2.14 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 83  IRNV*MYQRISIKPDRSRAKTEPSTHVITSPLDDVSKTQSFRTGDRKK 226
           ++++   ++  +KP+RSR K   S + +T  + D  K+        KK
Sbjct: 265 LKSIKQLRKRIMKPERSREKATKSPYDVTQSVSDTGKSSKSSESKSKK 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,813
Number of Sequences: 27780
Number of extensions: 254426
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)