Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_O14
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotia...    32   0.25 
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    29   2.3  
At3g20490.1 68416.m02595 expressed protein                             28   4.1  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   7.1  
At3g23600.1 68416.m02968 dienelactone hydrolase family protein s...    27   7.1  
At2g34650.1 68415.m04256 protein kinase PINOID (PID) identical t...    27   7.1  
At1g53140.1 68414.m06017 dynamin family protein low similarity t...    27   7.1  

>At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotiana
           tabacum, PIR:T03265
          Length = 235

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 113 SIKPDRSRAKTEPSTHVITSPLDDVS--KTQSFRTGDRKKL 229
           SIKPD  + + +P+T ++  P  + S  +TQS  TG  KKL
Sbjct: 5   SIKPDDKKEEEKPATAMLPPPKPNASSMETQSANTGTAKKL 45


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 478 ISSKVSSAAPNDSVDRMAHADSPDTTKW 395
           I S +++ +PN     ++H DSP++T W
Sbjct: 559 IHSPITTLSPNSKRVSLSHLDSPESTPW 586


>At3g20490.1 68416.m02595 expressed protein
          Length = 458

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 481 WISSKVSSAAPNDSVDRMAHADSPDTTKWLS 389
           W++ K  +AAP D+  R   ADS     W +
Sbjct: 380 WLNPKTRAAAPKDAGKRRVSADSGSAGHWFT 410


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 520 QLKHTCGCSLSTVWISSKVSSAAPNDSVDRMAHADSPDT 404
           QLKHT    ++   IS K++ A+P D     AHAD+  T
Sbjct: 61  QLKHTRPEDMAE--ISEKMAKASPEDIAAMRAHADAQFT 97


>At3g23600.1 68416.m02968 dienelactone hydrolase family protein
           similar to SP|Q9ZT66 Endo-1,3;1,4-beta-D-glucanase
           precursor (EC 3.2.1.-) {Zea mays}; contains Pfam
           profile: PF01738 Dienelactone hydrolase family
          Length = 239

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 583 PECCKTPPSFSPIS 542
           P+CC+ PP+ +P+S
Sbjct: 4   PQCCENPPTLNPVS 17


>At2g34650.1 68415.m04256 protein kinase PINOID (PID) identical to
           protein kinase PINOID [Arabidopsis thaliana]
           gi|7208442|gb|AAF40202; contains protein kinase domain,
           Pfam:PF00069
          Length = 438

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 402 VVSGLSAWAILSTLSFGAAEETFDEIHTVLRLHPHVCFNWKYFNISK 542
           + SG  + +  S LSF A   T  E  + L L PH   ++ Y  I +
Sbjct: 18  ISSGTESCSSFSRLSFDAPPSTIPEEESFLSLKPHRSSDFAYAEIRR 64


>At1g53140.1 68414.m06017 dynamin family protein low similarity to
           dynamin-like protein E [Arabidopsis thaliana]
           GI:19423872; contains Pfam profile PF00350: Dynamin
           family
          Length = 817

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 367 DEESIKKRKAISSYLDYQHGPFYRRYRSALPKKLSMRSTQC*DYT 501
           DEE  +      S  D+      +RY+ A P  L++   +C + T
Sbjct: 316 DEEKFRSCIGFGSLRDFLESELQKRYKEAAPATLALLEERCSEVT 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,137
Number of Sequences: 28952
Number of extensions: 238235
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)